LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1961	ATGGCCGACGTCGTGGTTTCGAACGACAGTTTCAATCCCATGAAGAAGAAGAAGAAGAACGCCAATCTCCTGCTCGGCCGCTTCGAAGTCGGAAAACTACTCGGCCATGGAACCTTCGCGAAGGTCTACTACGCTCAGAACATCAAAACCAATGAAGGCGTCGCCATCAAGATCATCGACAAAGAAAAAATTCTCAAAGGCGGTTTAGTCGCTCACATCAAGCGCGAGATCTCAATCCTCCGCCGCGTCCGTCACCCAAACATCGTCCAGCTCTTCGAAGTCATGGCCACCAAGACGAAGATTTACTTCGTCATGGAATACGTCCGTGGCGGCGAGTTATTCAATAAAGTCGCCAGAGGTCGATTGAAGGAAGAAGTCGCCAGAAAGTATTTCCAGCAATTGATCTCCGCCGTCGAATTCTGCCACGCCAGAGGCGTCTACCACCGCGATCTCAAGCCTGAAAACTTGTTACTCGATGAGAACGGCGATCTCAAGGTCTCCGACTTCGGCCTCAGCGCCGTCTCTGATCAAATTAGACAAGACGGCTTGTTTCACACTTTTTGCGGAACGCCTGCGTATGTTGCTCCAGAGGTTTTGGCCAGAAAAGGATATGATGGAGCCAAAGTTGATCTCTGGTCTTGTGGCGTTATTCTCTTCGTTTTAATGGCGGGCTATTTACCATTCCATGATCAGAACGTTATGGCTATGTACAAGAAGATTTACAGAGGCGTTTTCCGGTGTCCCAAGTGGTTCTCACCTGAGCTAGGCCTCTTATGTACTCGTCTCCTCGATACAAACCCAGAAACCAGAATCTCAATTCCAGAAATCATGGAAAACAAGTGGTTCAGGAAAGGGTTCAAACAAATCAAATTCTATTTCGATGACGATAAGCTCTGCACCAGTGTTGAAGACATTGACAAACTGGATTTAAACAAAGAAGACATAGAATCAGTGTCAGACTATTCCGTATCAGAATCCGATTCAGAGCTGGAAATTAAAAGAAGAAACAACGTATCGCTTCCAAGACCAGCGAGCTTGAATGCATTTGATATAATATCATTTTCTGCAGGCTTCGATCTCTCTGGGTTGTTCGAGGAGAAAGGCGACGAGGAGAGGTTCGTGTCAGGCGCGCCGGTGTCGGAGATTATATCGAAGTTGGAGGAAATTGCGCAGTTGGTGAGCTTCACGGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGATCGAGGGAAGGTGTGAAGGGGCCATTGACGATCGCGGCGGAGATATTCGAACTGACTCCGTCGTTGGTGGTGGTGGAGGTGAAGAAGAAAGCAGGGGACAAAGCAGAGTATGAACAGTTTTTTAACTCTGAATTGAAACCTGGGTTGCAGAAGTTGATGATAAATCATGAATCAGCAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGAAATTCTTCTGATGATACTCCTCAGCCATTGAAAATACAATCTGATTTTGATTCTTAG	1494	0.4665	MADVVVSNDSFNPMKKKKKNANLLLGRFEVGKLLGHGTFAKVYYAQNIKTNEGVAIKIIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVARGRLKEEVARKYFQQLISAVEFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVILFVLMAGYLPFHDQNVMAMYKKIYRGVFRCPKWFSPELGLLCTRLLDTNPETRISIPEIMENKWFRKGFKQIKFYFDDDKLCTSVEDIDKLDLNKEDIESVSDYSVSESDSELEIKRRNNVSLPRPASLNAFDIISFSAGFDLSGLFEEKGDEERFVSGAPVSEIISKLEEIAQLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKAGDKAEYEQFFNSELKPGLQKLMINHESATSSSSSSSSSSRNSSDDTPQPLKIQSDFDS	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1961	497	CDD	CIPK_C	347	458	-	-
	Prci11g1961	497	Pfam	NAF domain	343	399	IPR004041	GO:0007165
	Prci11g1961	497	ProSiteProfiles	NAF domain profile.	341	365	IPR018451	GO:0007165
	Prci11g1961	497	CDD	STKc_SnRK3	27	281	-	-
	Prci11g1961	497	Pfam	Protein kinase domain	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci11g1961	497	SUPERFAMILY	Protein kinase-like (PK-like)	24	283	IPR011009	-
	Prci11g1961	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	146	158	IPR008271	GO:0004672\|GO:0006468
	Prci11g1961	497	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	17	455	-	-
	Prci11g1961	497	Gene3D	Transferase(Phosphotransferase) domain 1	17	340	-	-
	Prci11g1961	497	MobiDBLite	consensus disorder prediction	462	497	-	-
	Prci11g1961	497	FunFam	Non-specific serine/threonine protein kinase	19	107	-	-
	Prci11g1961	497	SMART	serkin_6	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci11g1961	497	ProSiteProfiles	Protein kinase domain profile.	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci11g1961	497	Gene3D	Kinase associated domain 1, KA1	341	462	-	-
	Prci11g1961	497	ProSitePatterns	Protein kinases ATP-binding region signature.	34	57	IPR017441	GO:0005524
	Prci11g1961	497	MobiDBLite	consensus disorder prediction	461	497	-	-
	Prci11g1961	497	FunFam	Non-specific serine/threonine protein kinase	343	461	-	-
	Prci11g1961	497	FunFam	Non-specific serine/threonine protein kinase	18	331	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1961	Prci-Chr11	16905168	16907075	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1961	15	460	CBL-interacting serine-threonine protein kinases	AT4G18700	80.269	0.0	740

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Prci11g1961		Pkinase	1.9e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1961	-		-	gmx:100790133	769.229