Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1960 ATGACAGACAAATTTCGAGCCTCTCTAGCTAAAATGAGACCCTTTTCCAGATTCTTGATTCTTCTGGCTCTGCTTGCTCTTGTTGAATCTTCCTCCTCCTGCAAACTTAGTCAACAAGACCTCAACCTTGTGTCCAAGGCCTTCAAATCAGTCTCTGGATTCAACGTTTCCTGGATATCCCACTGTTCCGTCAACGATCAGTTTAGGGCCATAAGGCTTGCTTCCAAGAATCTCCGAGGGGCTATTTCGTGGAAGTTTCTGAGGAACATTTCAAACTTGCAGGTTCTTGATCTCTCTGGAAATTCTCTTCAAGGTCAAGTGCCTAGCTGGTTCTGGGCTAGCTCCGGCTTACTGGAGGTCAATCTTTCCAATAACAGGTTCGGAGGTAGCATTAATGGCTCCTTGGCCGATTCTTCTCTTCAAATGCTTAATCTCTCGCACAATAGGTTCACGAATCATGTTCAGCTTTCTGGCTTTTCAAAGCTGAAAGTTCTTGACCTTTCTCATAACAATCTGAAATACCTGCCTTCTGGGTTTCAAAAGATCGCCAACCTGAATCACGTTGACCTATCCAACTGTGAAATGAAAGGAAATGTCAAACCTCTCTCTGTTTTGAAGTCATTGAATTACTTGGATCTTTCTAATAACCAAATGAATGGCACTTTCCCTTCTGATTTCCCTCGTCTTCGTGCCCTTCGTTTCTTGAACATTTCTCACAACAATTTCAGAGCAATACTTAGCTTCGATGCGTACAAGAAATTCGGCAAATCAGCTTTCCTTCACGCCGGTGCTAGCTTCAATTACAACGCTTCCAAAACGGCGCCGTTTCATCACCCTTCGTTTCATTCTCCGAAACGAAGTCCTACCAGGAGGAAACGACCTAAATCAAAATCTAAAACACTGATTCTCTCAGTGTGCTCTGCTTCAGGATTCGTCATTGTTCTATTGTGTATTTCTATATTCTGCGTCTACAGAAAAAAGAGACTATTGGCTAAGAAAAGCAAATGGGCGATTTCGAAACCGGTACCGCCATTGCCTTTCAAGGTTGACAAATCTGGACCATTCGCTTTCGAGACTGAATCGGGTACGTCGTGGGTGGCTGATCTGAAGGAGCCATCATCTGCGCCCGTTGTGATGTTCGAGAAGCCATTGATGAACTTGAGCTTCAAGGACCTGATCGCCGCGACGTCGCACTTCGGCAAGGACTCGTTGCTCGCCGAGGGCAGGTGTGGCCCCGTCTACAGAGCCGTCTTACCAGCCGGCGGAGATATCCACGTGGCAATCAAGGTTCTGGAGAGCGCCAGAGACGTTGATCATGACAGCGCTGTTGAATTGTTCGTTGAACTCTCCAAGCTGAAACACCCAAACGTACTCCCTCTCTCCGGTTACTGCATTGCAGGAAATGAAAAGCTAGTGTTGTACGAGTTCATGTCGAACGGCGATTTAGGAAGGTGGCTCTATGAGTTGCCGACGGGGCCTACTAACGTGGAGGATTGGAGTGGCGACACGTGGGAAATTCAAAACGGCATCGGATTGCAGGCCTCGTCTTCGAAAACGATGAGTTGGGAAACACGACACTGTATCGCCGTCGGGATAGCACGTGGCCTGGCGTATCTCCACCACGCGGGATCAAAACCCGTTGTACACGGCCACCTAGTCACTTCCAACATCTTGCTCGCCGACGACTTCGAGCCGCGGATTACTGATTTCGGTTTCCGAAAAATCGGGCAGCAAGATAACCCGAATTGCACAACTGAGACGGACGTTTATTGTTTTGGCGTCATACTGATGGAGCTCTTGACCGGGACAGCCGGCACGGCGGAGACGGTGGTGTGGGTAAGGAAGATGGTGAGGGAGGGCAATGGTGTGCGTGTGTTGGACGAGAGGCTGAAAGATGACGGCGGTGAGTTGGAGAGGGAGATGGCGGAGAGCCTTCGATTGGCGTACTTGTGCACGGCGGAGTCACCCGAAAAGAGGCCCACGATACAGCAGGTCCTTGGTTTGCTCAAAGACATTCATCCTCATGGTGGACTCCATCGGTCTCAAGTTTGA 2052 0.4883 MTDKFRASLAKMRPFSRFLILLALLALVESSSSCKLSQQDLNLVSKAFKSVSGFNVSWISHCSVNDQFRAIRLASKNLRGAISWKFLRNISNLQVLDLSGNSLQGQVPSWFWASSGLLEVNLSNNRFGGSINGSLADSSLQMLNLSHNRFTNHVQLSGFSKLKVLDLSHNNLKYLPSGFQKIANLNHVDLSNCEMKGNVKPLSVLKSLNYLDLSNNQMNGTFPSDFPRLRALRFLNISHNNFRAILSFDAYKKFGKSAFLHAGASFNYNASKTAPFHHPSFHSPKRSPTRRKRPKSKSKTLILSVCSASGFVIVLLCISIFCVYRKKRLLAKKSKWAISKPVPPLPFKVDKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLSFKDLIAATSHFGKDSLLAEGRCGPVYRAVLPAGGDIHVAIKVLESARDVDHDSAVELFVELSKLKHPNVLPLSGYCIAGNEKLVLYEFMSNGDLGRWLYELPTGPTNVEDWSGDTWEIQNGIGLQASSSKTMSWETRHCIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEPRITDFGFRKIGQQDNPNCTTETDVYCFGVILMELLTGTAGTAETVVWVRKMVREGNGVRVLDERLKDDGGELEREMAESLRLAYLCTAESPEKRPTIQQVLGLLKDIHPHGGLHRSQV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1960 683 FunFam Calmodulin-binding receptor kinase CaMRLK 138 248 - -
Prci11g1960 683 Gene3D Ribonuclease Inhibitor 27 134 IPR032675 -
Prci11g1960 683 PRINTS Leucine-rich repeat signature 205 218 - -
Prci11g1960 683 PRINTS Leucine-rich repeat signature 162 175 - -
Prci11g1960 683 Pfam Leucine Rich Repeat 92 110 IPR001611 GO:0005515
Prci11g1960 683 Pfam Leucine rich repeat 205 242 IPR001611 GO:0005515
Prci11g1960 683 Pfam Leucine rich repeat 139 193 IPR001611 GO:0005515
Prci11g1960 683 Gene3D Phosphorylase Kinase; domain 1 359 476 - -
Prci11g1960 683 SMART LRR_typ_2 229 250 IPR003591 -
Prci11g1960 683 SMART LRR_typ_2 205 228 IPR003591 -
Prci11g1960 683 SMART LRR_typ_2 90 113 IPR003591 -
Prci11g1960 683 SMART LRR_typ_2 159 181 IPR003591 -
Prci11g1960 683 Gene3D Transferase(Phosphotransferase) domain 1 477 581 - -
Prci11g1960 683 Gene3D Transferase(Phosphotransferase) domain 1 582 674 - -
Prci11g1960 683 Gene3D Ribonuclease Inhibitor 135 262 IPR032675 -
Prci11g1960 683 ProSiteProfiles Leucine-rich repeat profile. 161 182 IPR001611 GO:0005515
Prci11g1960 683 ProSiteProfiles Protein kinase domain profile. 399 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g1960 683 Pfam Protein tyrosine and serine/threonine kinase 403 576 IPR001245 GO:0004672|GO:0006468
Prci11g1960 683 MobiDBLite consensus disorder prediction 277 296 - -
Prci11g1960 683 FunFam Putative LRR receptor-like serine/threonine-protein kinase 360 476 - -
Prci11g1960 683 SUPERFAMILY L domain-like 49 246 - -
Prci11g1960 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 59 672 - -
Prci11g1960 683 SUPERFAMILY Protein kinase-like (PK-like) 376 669 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1960 Prci-Chr11 16876119 16878887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1960 47 672 Receptor kinase-like Gene Family AT5G07280 31.045 2.80e-68 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Prci11g1960 PK_Tyr_Ser-Thr 2.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1960 - - gmx:100778920 889.412