Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1950 ATGTTCAATAATTGTGCTTATATATACACACACACGCACATACATACACACACCAACCTAATCTTGATATATCGATCAACAAAAAAAGTAAACGAAACAACCATGGCAGCACCAACCGAAGTTAATAAGATCCTCAAGGGCAGAAGAAAATCATCATCCCGAGGCCACAACCGGTTTGTCGGAGTCCGTCAAAGGCCGTCCGGCCGGTGGGTGGCTGAGATCAAAGACTCTCTTCAGAAGGTCAGGCTTTGGCTCGGAACATTCGACACAGCCGAGGACGCAGCTCGCGCCTATGACACAGCCGCTCGTGCTTTGCGTGGCCCCAATGCTCGCACCAACTTCGACTTGCCAAATCCTGCCACCGCCGGCGCCACCCAACACGGTGGCAGTTTAAGCTGCATGCCGGAGAACCTCGAGCCCTTCTCTTTCGAGGACACCGGGGCGGATCATCACGACCTTATCGGAGCCCTCAAGGCCAAGCTATTTGATGACAAAGGAGGAGTAGTGAGGCTTCCTTCTCAATTATCTAACAATAATCTGATCTTGAATACAGGATCTGTAAACCCTAATAATAATCCTGGGTTTACAAGCACGTCTTCATCAAGCACAAGCGCAAGTAATGCTAAGAGCAATCACACTAATAATGATAACTGTAACAAGCTTATCTCAGATCTAGATCATGGGGGTTCTGTAGCAAGAAATAGTCCATGGTCCAATAACAATGAGATAGCTAATTATGAATTGCCTTGGCCTACATGTCCTACACAGGTGAACCATGTTGCTGAAAATAATAGTAGCTTGTTTACCCCTTCAAATAATTCTCCATGGCCATTATCTGGCGTTATTGATCAGTCTGTGATGAATATGATGTATTCAGATTATGTGGATGTATTAGTAGACAAGAACTTTATTAACGTCGAACATGATTCATCAGATAGAGTCTTAGGATACTCTGATTGTAATAACAACCAAACTATGTTGTATTATTCTGATCATAATCACAGAGCTTCAAATAGCAATACAAGTAATGCTCAAATTGGAGGACTACCCCAAGGGTTCTGGACACCAGATCATCAGCAACATCAGCAGCAGCAAGTTCTTGTGCAGTGTGACAATAATGGTGGTGGCTGGTTTAGTTCGAGTAATAATGGTACGTGGGATCCTTTGCTTTTTGTGTCGTCTCAGCTAGGTTGA 1194 0.443 MFNNCAYIYTHTHIHTHTNLILIYRSTKKVNETTMAAPTEVNKILKGRRKSSSRGHNRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGPNARTNFDLPNPATAGATQHGGSLSCMPENLEPFSFEDTGADHHDLIGALKAKLFDDKGGVVRLPSQLSNNNLILNTGSVNPNNNPGFTSTSSSSTSASNAKSNHTNNDNCNKLISDLDHGGSVARNSPWSNNNEIANYELPWPTCPTQVNHVAENNSSLFTPSNNSPWPLSGVIDQSVMNMMYSDYVDVLVDKNFINVEHDSSDRVLGYSDCNNNQTMLYYSDHNHRASNSNTSNAQIGGLPQGFWTPDHQQHQQQQVLVQCDNNGGGWFSSSNNGTWDPLLFVSSQLG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1950 397 MobiDBLite consensus disorder prediction 114 128 - -
Prci11g1950 397 MobiDBLite consensus disorder prediction 109 128 - -
Prci11g1950 397 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Prci11g1950 397 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 54 241 - -
Prci11g1950 397 MobiDBLite consensus disorder prediction 338 360 - -
Prci11g1950 397 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 MobiDBLite consensus disorder prediction 182 217 - -
Prci11g1950 397 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Prci11g1950 397 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 CDD AP2 58 115 IPR001471 GO:0003700|GO:0006355
Prci11g1950 397 FunFam ethylene-responsive transcription factor RAP2-11 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1950 Prci-Chr11 16650707 16652076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1950 46 114 AP2-EREBP Transcription Factor Family AT5G19790 68.571 1.41e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci11g1950 AP2 5.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1950 - - pcin:129287300 765.763