Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1942 ATGACAAGGGCTGTGCGCAGTAGGATACTCAAGGATGCGAATGGTGATATCAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATTCTTGCTGATAGGTCGCTTATGAGGGACCTTGTTGTGCTGCAGAGGTCACGCTCTCTGAGAGACCCTTCAGCAAGTCCTCCTTCATGGCATTCTCCTTCCATAATTGAGGTTCTTTCCAAAGAGGGAAGAAGGTCTGTAGGAATTGAACGTCGGAAAGAAGGAAGGCAATTGTCTGGAACCTCACCACCTGTGGTAAGTTTAGGTCTGTCAAAAGTTGCCCCAGGTGAGGAGAGCCGGGGCAATGATGGAGGGTCAGCAAGTAGAGACCGCAGTAGCAGGAGTGGAATTGGGGATGGGCGGAAAGTTGGAAGAGAAGAGTCTGGTCGGAAGAGTGACAGGCCTGATTATATGGGTCTTAGTGAAGAGCAACTTCACAGTCGACTTGGCAAAGATTTGGTTGAAGATGTTGTTTCAAGGCATTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGGGGGAAGCATGTTCGAGATGTTCAGGTTAAGACCCTTTCTGAGCAACTGAATGATGTTCCACAGGAAAGTGATGATTTGGCATATTCAAACAATAATGTTCATGGAAGGTTTCCTAGGCAGCAGAAAATTATTGAGGCACCAGAAACCAGCACACGTGGTCATGGAAACGGAGTGAATAGGGGTAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGCTTCTGTGGCATCTAAAGATGCTGGAGCTGAGAATGAACTGTCTGTTGCTTCTAACTCATTTGCCCATGGTTCAGCCCTCCATAAATATCACTTGGAAGAGGAAGATGAGTATGCAGAAGATAATGTCACCAGGGCACCCAAAAATGGGTGTGGTATTCCTTGGAATTGGTCTAGAATTCATCACAGGGGTAAAACAATCCTTGACATGGCTGGAAGAAGTTTATCTTGCGGTTTATCTGACTCAAGATTAAAGAAAGGGGCATTGGATGCTGATGGAAGAAATATTTCTGACATGCCCATAGCATCTGACCAATCAAGCTCATTTACCAGGTCTGATGGAGAGGCACTACCGCTACTAGTTGAGGCATCAGGATCTCAGGGAAGTACTGAGAATGGTTGTTGGGGGCATGACTATTCTGGGGAGCTTGGTATTTTTGCTGATAATTTATTGAAGCGTGACATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGGGATCAGCATAAGATGAGAGGGAATCGCCATGGCAGGCATCAGAGCTTAACACAAAAATATCTGCCGCGAACCTTCAGAGATTTGGTTGGGCAGAATTTGGTGGCACAAGCTCTTTCAAATGCAGTCATGAGAAGAAAAATTGGATTTCTGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGGATATTTGCCAGAGCTTTAAATTGTCATTCTTCTGAACACCCGAAACCATGTGGCTTCTGCAATTCTTGCACAGCACATGATATGGGCAAGAGCAGAAATATAAGGGAAGTTGGCCCAGTCAGTAATTTTGACTTTGAGAGTATCATGGATCTACTTGACAACATGATTGTTTCCCAGCTTGCTTCACAATACAGAGTATTCATTTTTGATGATTGTGATACTCTGTCAACTGAATGCTGGAGTGCCATATCAAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATACTTGTTAGTTCGACTCTTGATGGATTGCCTCACATAATCATGTCCAGGTGTCAGAAATTTTTCTTCCCAAAGCTGAAGGATTCAGACATTATGTATACATTACAGAGGATTGCAACCAAAGAGGGTCTAGAAATTGATAGGGATGCCTTGAAACTTATTGTATCAAGATCAGATGGATCATTAAGAGATGCTGAGATGACCCTCGAACAACTTAGCTTGCTTGGGCGGAAAATATCAGTTCCTCTTGTCCAGGAATTAGTTGGGCTTATATCTGATGAGAAATTGGTTGATCTGCTTGATTTGGCACTATCCGCAGACACAGTTAACACTGTGAAGAATTTGAGGGTGATAATGGAAACTGGTGTTGAGCCGTTAGCCTTAATGTCACAGCTTGCTACTGTAATTACTGACATACTTGCTGGGACTTATGATTTCACAAGGGAAAGGAGGAGAAGGAAGTTTTTCCGTAGACATCCATTATTGAAAGAAGACATGGAAAAGCTACGCCAAGCTTTGAAAACTTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACCTGGCTAACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATATGCTGCCTACATCATCTGATAATAGTTTCCATCATAGTCCCTTGCCCCTACATAATGCAGATGGGAGAGAAGCAGCCCGGAGAACAAGTACTAGTGTTGAAATTCCTCGCAAAGAGAGGCGTTTATCAATGGATTCTAGAACAGAGAATATACATGCTGGTACTTCAGCTGATGGTGCGGCAAAGGGTCTTAGTTCAGATAATAAAAGACTTGCTGTGGCTGGTTTTGTTGCTCAACAGACGTCTTCACATGTTACTGATATGATTAGAATGAATGACAGACAGACTCTGGGTAAAAACCGGAAAGGAATTGAAGAGATATGGTTAGAGGTGCTTGACAGAATTCAGGTTAATGGTCTAAAAGAGTTTTTATATAGAGAAGGGAAGCTGGTCTCTGTTAGTTTTGGTGCAGCTCCAACTGTGCGGCTAATGACTAGTTCCCAACAGACCAAATCTACTACCGAGAAGTTCCGGGGGCATATTTTACAGGCACTTGAATCTGTCCTTGGATCTTCCATAACGTTAGAAATTAGATGCGAATCACATAGAGATGCAGGATCAGGGTCTCAACTCCCTCTTGTACTGCCTTCCACTAAAGATGGTTCTGTGGAAAAGAAAATGAGTGAGATTGTAGAAGAAGCAGTTTCTCCGAAGGACCACAAGAATAATGAGCAGAAAGCTGATCTGAACAAAAAACCAGTTGTGACCTCACATTTAGAAAGAAGGAAGCTTAGGGAACAAGGTCAGAGCCGAAGCATTGTGAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAGGGACATACACAGCGAAGTGGGTGGTCAAAACGTAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCTAGATCAAGGAGCTTACTATGCTGGAAAGCATCACGAGTAACCCGGCGGAAGCTCTCACGTTTGAAAGTCAGAACCAGAAAACCTCATGCATTGCTGAATCTGGTTTCATGTGGAAAATGTCTCACTTCCAAATCGCCAAGGTAG 3438 0.4357 MTRAVRSRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIEVLSKEGRRSVGIERRKEGRQLSGTSPPVVSLGLSKVAPGEESRGNDGGSASRDRSSRSGIGDGRKVGREESGRKSDRPDYMGLSEEQLHSRLGKDLVEDVVSRHSESKERKSKQRGKHVRDVQVKTLSEQLNDVPQESDDLAYSNNNVHGRFPRQQKIIEAPETSTRGHGNGVNRGKRRKFRSARRARASVASKDAGAENELSVASNSFAHGSALHKYHLEEEDEYAEDNVTRAPKNGCGIPWNWSRIHHRGKTILDMAGRSLSCGLSDSRLKKGALDADGRNISDMPIASDQSSSFTRSDGEALPLLVEASGSQGSTENGCWGHDYSGELGIFADNLLKRDIDSDLASEARSGDQHKMRGNRHGRHQSLTQKYLPRTFRDLVGQNLVAQALSNAVMRRKIGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCTAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLASQYRVFIFDDCDTLSTECWSAISKVIDRAPRRVVFILVSSTLDGLPHIIMSRCQKFFFPKLKDSDIMYTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGRKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERRRRKFFRRHPLLKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFHHSPLPLHNADGREAARRTSTSVEIPRKERRLSMDSRTENIHAGTSADGAAKGLSSDNKRLAVAGFVAQQTSSHVTDMIRMNDRQTLGKNRKGIEEIWLEVLDRIQVNGLKEFLYREGKLVSVSFGAAPTVRLMTSSQQTKSTTEKFRGHILQALESVLGSSITLEIRCESHRDAGSGSQLPLVLPSTKDGSVEKKMSEIVEEAVSPKDHKNNEQKADLNKKPVVTSHLERRKLREQGQSRSIVKSKVSLAHVIQQAEGHTQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKVRTRKPHALLNLVSCGKCLTSKSPR 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1942 1145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 668 IPR027417 -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 136 188 - -
Prci11g1942 1145 FunFam DNA polymerase III subunit gamma/tau 442 620 - -
Prci11g1942 1145 Pfam DNA polymerase III subunits gamma and tau domain III 677 736 IPR022754 GO:0003887
Prci11g1942 1145 NCBIfam DNA polymerase III subunit gamma/tau 447 795 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Prci11g1942 1145 MobiDBLite consensus disorder prediction 845 864 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 818 839 - -
Prci11g1942 1145 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 450 853 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 251 266 - -
Prci11g1942 1145 FunFam DNA polymerase III subunit gamma/tau 622 684 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 91 199 - -
Prci11g1942 1145 Gene3D - 439 618 IPR027417 -
Prci11g1942 1145 CDD HLD_clamp_pol_III_gamma_tau 621 684 IPR045085 -
Prci11g1942 1145 Pfam DNA polymerase III, delta subunit 464 621 - -
Prci11g1942 1145 SUPERFAMILY post-AAA+ oligomerization domain-like 692 795 IPR008921 GO:0003677|GO:0006260
Prci11g1942 1145 Coils Coil 754 784 - -
Prci11g1942 1145 Gene3D - 622 684 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 805 839 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 428 448 - -
Prci11g1942 1145 MobiDBLite consensus disorder prediction 239 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1942 Prci-Chr11 16479143 16487585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1942 447 733 Core DNA Replication Machinery Family AT1G21690 22.569 9.44e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1942 - - gmx:100809005 1718.36