Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1931 ATGGCTTCGGGAGCTATATTCTCTTCGTTGCGGCGGAGGAGGTCGCCGACTTTGGAAGCCTTCCTTGCTCCGGTTGACTTGTCCGATGTTGCCCTGGTTCAAACGCTCATCTCTGTGGCTAGCGAGCTCGTCACGTGCTCTTCCGGACGCTCTTTCTTGTTCCAGCGCAAGAATTCGAGGTCACTCATACGAAAAGTCGAGGTCTTTCAGTTGCTTTTGGAATATTTGACGGACACTGGCGCGTGTATTCCACCGACGGCGGTTCTCTGCTTGAAAGAGCTTTATTTGCTATTGTACCGGTCGAAGATTCTTCTTGACTATTGCGCGCAATCAAGTAAGTTATGGCTTTTGCTTCAGAACCATTCAATATCCGGCCATTTCCATGATTTGAACCAGGAAGTATCGACCATTCTGGATGTATTTCCTATCAACGATATCGAATTAAGTGAGGATGTCAGGGAACAGATTGAGCTGTTGCAGAAACAGTCTAGGAATACTAAGTTATTTATAGACAAGAAAGATGATGATCTCAGGATTCGCTTCTTGTCATTTCTTGATGAATTTGAAAACGGAAAAATTCCTGATTCATCAGAATTAAGGTTTTTATTTGTGGAGAAATTGAAGATTCTGGATGCTAGAAGTTGCAGAAGTGAAATTGAGTCTTTGGAGGAGCAGATTGTGCATCATGAGGGAGACGTTGAGCCAACAATTTCTGTGCTTAATGGGCTTGTTGCTTTGACTCGGTATTGCAGGTTTTTGCTTTTCGGATTTGAGGAAGATGAGCTAGAGTCAAGCAGTGGAAATAAGAAAAAGCCCAGAAGGGGATTGATTAGTCAAGAAATTGCTGGAACTTTTATAAGTATTCCAAAGGACTTTTGCTGTCCAATAACATTGGATCTGATGCGTGACCCAGTTATAATTTCCACAGGACAGACATATGATCGATGTTCCATATCCCGGTGGATAGAGGATGGCCACTGTACTTGCCCAAAAACGGGGCAAATGCTTACTAGCACACGCCTTGTTCCTAATCGATCTCTTAGGAATTTGATCATGCAATGGTGCACTGCACACACAATTCCATATGACCCACCAGAGGTCATAGATCCTTCGGTTGAAATTTTTGCATCGACTTCTCCTACCAAGGCTGCCCTTGAAGCCAACAGAGCAACAGCATCACTTCTCATCCAGCAGCTTGCAGATGGATCACAAGTTGCAAAGACTGTAGCTGCTCGGGAGATTCGATTGCTAGCAAAAACAGGAAAAGAAAACCGGGCATTCATTGCTGAAGCTGGCGCCATTCCTCATCTTCAAAAGTTACTCTCCTCTTGTAACGCAGTTGCCCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCAATTTATGAGAAGAACAAAAGTCGGATAATGGATGAGGAAGGATGTCTGGCATCAATAGTTGAGGTGTTGAGATTTGGGCAAACAACAGAGGCAAGGGAAAATGCAGCCGCAACATTGTTCAGTCTCTCTGCTGTCCATGACTATAAGAAGAGAATTGCAGATAAGGTGGGAGCTGTGGAAGCCCTGGCAGATTTGTTGCAAGAGGGAACACCAAGAGGGAAGAAGGATGCTGTGACAGCTCTGTTCAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATTGAAGCAGGGGCTGTAACAGCTCTCGTTGTGGCTTTGGGAAATGAAGGAGTTGCTGAGGAAGCAGCAGGTTCCTTGGCCTTGATTGTTCGGCAACCTATCGGGGCTAAGGCTGTGGTTAATGAGGAAGCGGCTGTAGGTGGATTAATTGGAATGATGCGATGTGGGACACCAAGAGGTAAAGAGAATGCAGTTGCAGCCTTACTTGAACTGTGCCGGAGTGGCGGTGCAGCTGCAACAGAAAGGGTGGTTAGGGCACCAGCTTTGGCAGGATTGCTTCAAACCTTGCTTTTTACCGGGACAAAGCGGGCAAGAAGAAAAGCAGCCTCACTTGCTAGGGTGTTTCAGAGATGTGAACATGCATCTATTCATTATGGTGGTTTAGGTATGGGGTATGCATATGCTAGCAATTCAGCGGCAGATCGGGATACAAGCTTTGCCGGGGGTGGTTTAGGTATGGGGTATGCATATGCTGGCAATTCAGCGGCAGATCGGGATACGAGCTTTGCCGGTGATGTCTCGGTACCAGTGTCCATTTCTGTACCTGTTGTGTAG 2217 0.4587 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLISVASELVTCSSGRSFLFQRKNSRSLIRKVEVFQLLLEYLTDTGACIPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEVSTILDVFPINDIELSEDVREQIELLQKQSRNTKLFIDKKDDDLRIRFLSFLDEFENGKIPDSSELRFLFVEKLKILDARSCRSEIESLEEQIVHHEGDVEPTISVLNGLVALTRYCRFLLFGFEEDELESSSGNKKKPRRGLISQEIAGTFISIPKDFCCPITLDLMRDPVIISTGQTYDRCSISRWIEDGHCTCPKTGQMLTSTRLVPNRSLRNLIMQWCTAHTIPYDPPEVIDPSVEIFASTSPTKAALEANRATASLLIQQLADGSQVAKTVAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLSSCNAVAQENSVTALLNLSIYEKNKSRIMDEEGCLASIVEVLRFGQTTEARENAAATLFSLSAVHDYKKRIADKVGAVEALADLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVVALGNEGVAEEAAGSLALIVRQPIGAKAVVNEEAAVGGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHASIHYGGLGMGYAYASNSAADRDTSFAGGGLGMGYAYAGNSAADRDTSFAGDVSVPVSISVPVV 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1931 738 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Prci11g1931 738 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Prci11g1931 738 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Prci11g1931 738 PANTHER U BOX DOMAIN-CONTAINING 61 672 - -
Prci11g1931 738 SUPERFAMILY ARM repeat 392 669 IPR016024 -
Prci11g1931 738 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Prci11g1931 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Prci11g1931 738 FunFam RING-type E3 ubiquitin transferase 364 686 - -
Prci11g1931 738 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Prci11g1931 738 Gene3D - 373 514 IPR011989 -
Prci11g1931 738 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Prci11g1931 738 Gene3D - 516 673 IPR011989 -
Prci11g1931 738 Coils Coil 212 232 - -
Prci11g1931 738 SMART arm_5 547 585 IPR000225 GO:0005515
Prci11g1931 738 SMART arm_5 421 461 IPR000225 GO:0005515
Prci11g1931 738 SMART arm_5 462 504 IPR000225 GO:0005515
Prci11g1931 738 SMART arm_5 506 546 IPR000225 GO:0005515
Prci11g1931 738 SUPERFAMILY RING/U-box 276 361 - -
Prci11g1931 738 CDD RING-Ubox_PUB 289 341 IPR045210 -
Prci11g1931 738 Pfam U-box domain 288 359 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1931 Prci-Chr11 16346689 16349688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1931 1 737 U-box Gene Family AT1G29340 68.568 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1931 - - pcin:129285475 1367.44