Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1891 ATGGCGTTCCCAAATCAATTAGCTATGTCAGATTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACAAATCGTCAGGTCACTTTCTGCAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCTACTCGTGGTCGCCTCTACGAATATGCTAATAACAGTGTGAAAGCAACAATTGAAAGGTACAAGAAGGCATGTTCAGATTCATCTGGTGCTGGATCCACTTCTGAAGCTACTGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGAGCTCAAATCAGTAACCTGCGGAACAACAACAGGCAAATGATGGGGGAGACTTTGGCAGGTTTGAGTGCAAGAGATCTCAAGAACTTGGAGTCTAAGTTAGAGAAAGGCATTAGCAGAATTCGTTCCAAAAAGAATGAACTTCTATTTGCAGAAATTGAGTATATGCAGAAGAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCTGAAAGTGAGAGAAACCAGCAGCAGCAGCAGCAGCATAACATGAATGTGTTTCCTGGAGGGTCAAATTATGAAGCAATGCAGTCATCAAATGAGCATCAATTTGACTCTCGAGGTTTCTTCCAAGTGACTGGTTTGCAACCTACTAGTCACTACGCTCCCCAAGACCACATGTCCCTCCAATTAGTGTGA 759 0.444 MAFPNQLAMSDSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEATAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGLSARDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKIAESERNQQQQQQHNMNVFPGGSNYEAMQSSNEHQFDSRGFFQVTGLQPTSHYAPQDHMSLQLV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1891 252 Coils Coil 182 202 - -
Prci11g1891 252 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g1891 252 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Prci11g1891 252 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
Prci11g1891 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 203 - -
Prci11g1891 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 Pfam K-box region 102 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g1891 252 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Prci11g1891 252 MobiDBLite consensus disorder prediction 1 23 - -
Prci11g1891 252 Coils Coil 142 162 - -
Prci11g1891 252 Coils Coil 105 132 - -
Prci11g1891 252 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
Prci11g1891 252 Gene3D - 31 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1891 Prci-Chr11 15783043 15791302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1891 10 252 MADS-box Gene Family AT3G58780 63.115 5.65e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g1891 K-box 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1891 K09264 - gmx:732595 385.956