Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1882 ATGCAGCTAGATAGAACTGTCAAAGGAGAAATCACAATCAAGAAGAGACTAATTAAAATGGGGATACAGGGTCTTTTGCCCCAGTTGAAATCGATCATGGTCCCGATCCACATCAAGCAGCTCGAGGGTTGCTATGTAGCGGTCGACACATATTCTTGGCTCCACAAAGGTGCCTTATGTTGCAGTACCGAGCTTTGCAAGGGGCTACCTACATCCAGGCACATTGAGTATTGCATGCGTAGAGTAAATTTGCTGCGTCACTATGGTGTAAAGCCTATTCTTGTATTTGATGGAGGCCTACTACCAATGAAGAGCGAACAGGAGAACAAGCGTGCGAGGGTGAGAAAGGAAAATCTTGCACGTGCTGTTGAACATGAGTCACATGGAAATTCTGCTGCTGCTTTTGAGTGCTACCAGAAAGCTGATATCTCCCCTCTGGTTGCATGTGAACTAATTCAGGTGTTGAAACAGGAGAAAGTGCGTTATCTTGTTGCTCCTTATGAGGCAGATGCCCAGATGACATTCTTGGCAGCTAGCAAACAGGTTGAAGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGTCCAAGAATCATCTTTAAAATGGACAAGTTTGGTCATGGCGTTGAGTTTCAGCATTCCATGCTGCAAAAGAACAAAGAGCTTAGTTTTGATGGGTTCACCCGCCAAATGCTTCTTGAAATGTGTATATTCAGTGGCTGTGACTATCTGCAGTCCTTGTCAGGTATGGGTCTCAAAAGGGCTCATGCGATTATCAAAAGGTTCAAAAATTATGACAAGGCTCTTAAGCACTTGAGATTCAATGGAGTTTCCGTCCCTTCCTCTTATGAAGAATCATTCAAGAAGGCTATATTGACTTTTCAATATCAACGAGTTTATGATCCAATCAGGGAAGATATTATTCATTTGTCTGATGTACCAGCTGATATTGGTGATGACTTAGACTTTTTAGGACCATCTATGCCTAAAGAAACGGCTCAAGGAATAGCAAAAGGGGATCTTGATCCATTTAGCAAAATGCCATTTCAGGTAGAGAATCTTACTGCTGGATTGGCAATGGAGAGGGCTTCAGAAATAAAAGCGTCACATTCCAAAATTGCAAAGAAAAAGTTAGATTTACCAGTGCAGAAGAATGTTTTGACCAAGTATTTTTGTTTTGCATCTCTGGAAGCAAAAAGAAAATTCATAGCACCTCGGATGTCACCTACTGCTACAGATCAAAGCACATTGGGCTCATCTTCTGTCAGTCCCCAGGATCACGAGACTTTGGAGGCTGCTGCTGCTAAAACAAACAGATCTGCTGCATCCTTAGTTGACTCTGAATTTTTTGCCAATGTACCTCCCGTTGATAACTGTGTCGAAAACAGGCTGCCCACCAAATTTATAGAGTTGATGGAATTTTCACGTTTCAGTGAGAAGAGGAAAAATCCAGAATATACTATACTGCGACAGCTAGAGCCAATTCATAAACCTTGTCTGGGGTTGTATAAGGAGCATAAGGATACGAATGTCGAAGACTCTATTGAGGGCAAGACTAAGGAAGCAACAAGAAAGGTCCGTGTAAGGAGTCCTCATTTTCAGCAAAAACAAGAAGAAAAGGATAATTGTGACCAAAAGCAAGATTCCTTGGTCGAAGATGATTTTTCAATTGGTGATCATAAAAGTACCTTATCTGACAGTGCTTCAGGCAAAGTTGAAGATAAGGGGAAGACTGCAGAGATAACAAGAAAGGTCCTTGTAAGGAGTCCTTCTTTTCATCAAAAGCAAGAAGAAAAGAATAATTGTGACAGAAAGCAAGATTGTTTAATCAAAGATGATGTTGCCACTGGCGAACATAAAAATACCATATCTGACAGAGCTTTAGGCAAAGCTGAAGATACTATTGAGGGAAAGACTAAGCAGGCCACCAGAAAGGTCCTTGCAAGGAGTCCCTTTTTTCAGCATAAGCAACTAGAAAAGAATAATAGTGATCAAAAGCAAGATTGTTTGGCCAAAGATGATGTTGCCATTGATGAACCTAAAAATACCACGACTGGCAACCATATGATGAATAAAGTCCTGAAAAGGAAGACCTCCCCTGCTGACAGTGCTCAAAGGGAAAACTTTCATCCCGGCAACATGCTTCCCGCCTCAACTCTTCCTGACAATGAGTGTAATCCTGAAGAGAAGTTTGGTGCAAATATTTCCCACCTAGACCATTACTCAAAAATATCGGAGAAATCTATGGAAAAATTTGCTGCAATGTTATCATCCTTCAGATACACTCCATCTGGTTCTCGTGCCAGCGGTCTCCGTGCTCCTCTTAGGGATGTTCAGAACACTTGTAACACCAGGCCAAAACCTGTGGACTTTGAGCAATTTGCGTATGTGCCAAAAAAACAGAAGACTGACGGATTAAGTCGATGGGGCTAA 2439 0.417 MQLDRTVKGEITIKKRLIKMGIQGLLPQLKSIMVPIHIKQLEGCYVAVDTYSWLHKGALCCSTELCKGLPTSRHIEYCMRRVNLLRHYGVKPILVFDGGLLPMKSEQENKRARVRKENLARAVEHESHGNSAAAFECYQKAVXISPLVACELIQVLKQEKVRYLVAPYEADAQMTFLAASKQVEAVITEDSDLIPFGCPRIIFKMDKFGHGVEFQHSMLQKNKELSFDGFTRQMLLEMCIFSGCDYLQSLSGMGLKRAHAIIKRFKNYDKALKHLRFNGVSVPSSYEESFKKAILTFQYQRVYDPIREDIIHLSDVPADIGDDLDFLGPSMPKETAQGIAKGDLDPFSKMPFQVENLTAGLAMERASEIKASHSKIAKKKLDLPVQKNVLTKYFCFASLEAKRKFIAPRMSPTATDQSTLGSSSVSPQDHETLEAAAAKTNRSAASLVDSEFFANVPPVDNCVENRLPTKFIELMEFSRFSEKRKNPEYTILRQPXEPIHKPCLGLYKEHKDTNVEDSIEGKTKEATRKVRVRSPHFQQKQEEKDNCDQKQDSLVEDDFSIGDHKSTLSDSASGKVEDKGKTAEITRKVLVRSPSFHQKQEEKNNCDRKQDCLIKDDVATGEHKNTISDRALGKAEDTIEGKTKQATRKVLARSPFFQHKQLEKNNSDQKQDCLAKDDVAIDEPKNTTTGNHMMNKVLKRKTSPADSAQRENFHPGNMLPASTLPDNECNPEEKFGANISHLDHYSKISEKSMEKFAAMLSSFRYTPSGSRASGLRAPLRDVQNTCNTRPKPVDFEQFAYVPKKQKTDGLSRWG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1882 814 SUPERFAMILY PIN domain-like 21 245 IPR029060 -
Prci11g1882 814 Pfam XPG I-region 160 245 IPR006086 GO:0004518
Prci11g1882 814 MobiDBLite consensus disorder prediction 515 580 - -
Prci11g1882 814 Pfam XPG N-terminal domain 20 117 IPR006085 GO:0004518
Prci11g1882 814 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 230 351 IPR036279 -
Prci11g1882 814 FunFam exonuclease 1 228 300 - -
Prci11g1882 814 CDD PIN_EXO1 20 221 IPR044752 GO:0046872
Prci11g1882 814 MobiDBLite consensus disorder prediction 707 731 - -
Prci11g1882 814 FunFam Exonuclease 1, putative 20 226 - -
Prci11g1882 814 Gene3D - 20 226 - -
Prci11g1882 814 SMART HhH_4 232 265 IPR008918 GO:0003677|GO:0003824
Prci11g1882 814 Gene3D - 228 300 - -
Prci11g1882 814 CDD H3TH_EXO1 233 304 IPR037315 GO:0003677|GO:0035312
Prci11g1882 814 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 177 197 IPR006084 -
Prci11g1882 814 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 156 173 IPR006084 -
Prci11g1882 814 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 43 57 IPR006084 -
Prci11g1882 814 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 235 250 IPR006084 -
Prci11g1882 814 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 92 111 IPR006084 -
Prci11g1882 814 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 20 605 IPR006084 -
Prci11g1882 814 ProSitePatterns XPG protein signature 1. 90 104 IPR019974 GO:0016788
Prci11g1882 814 SMART xpgn3 20 118 IPR006085 GO:0004518
Prci11g1882 814 SMART xpgineu 161 227 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1882 Prci-Chr11 15726423 15734395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1882 20 286 Core DNA Replication Machinery Family AT5G26680 25.357 2.59e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1882 K10746 - gmx:100798062 884.404