Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1840 ATGACGAGCAAAGGAAGCAAAGATATAGAGAAGGACGCGTCCTCGCCTTCTTCCTCCTTCTCAGCGTCACCTGAGAGCAACATGAAGACCAGCTCCAGAATTGCTGATAAAGACAAAGCAATTGCTCAGTACAGTGCTGACGCGGGGATCTTGGCTGAGTATGAGCAATCTGGTGTGTCGGGAAAGTGGTTCGATTACTCGAGGTCGGTTCTTGATGCTCCGAAATCTGTGTCGGACGAGAAAATGACGGCTTACTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGTTGTATGCTTACAATAGAAGAACCCACTTTTCGGATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGGTTTAAACGGAAATCCTCATTCGAAAGTGAGTCTGATTGGAGTTGATGCTACTTCCCTATTCACGCCTTCTTCCGGGGCTTCACTTGCAAAAGCTGCGTCATCTAGGGAAATTTCTCTTCTAAATCCCATTTGGGTCTGTTCCATAGCAACCCAGAAGCCTTTTTATGCCATAATGCATCGGATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCTGGCGCTGTACAGTCTCAGAAACTGGCTGTACGGGCAATTTCAAGGTTGCAAGCTCTTCCTGGGGGAGATATTGGTGCTTTGTGCGATACTGTTGTTGAAGAAGTTCAAAAGCTTACTGGATATGACAGGGTTATGGTGTATAAGTTCCATAAGGATGATCATGGGGAGGTTGTGTCTGAAATCAGGAGGTCAGATTTAGAACCCTTTTTGGGTTTGCATTATCCTGCCTCGGATATCCCTCAAGCCGCTCGCTTCTTGTTTAAGCAGAACCGAGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAATGTCAAGAGTTAAAGCAGCCTCTCTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCATGCACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTTGTTATGGCAGTTATTGTCAATGGAAATGATACCACAAAGCTTTGGGGATTGCTTGTTTGTCACCACACTTCACCGCGTCATGTCCCTTTCCCACTTCGCTATGCTTGTGAGTTCCTGATGCAGGCTTTTGGCCTGCAGCTTTACATGGAGATGCAATTAGCATCACAGATGGCCGAGAAGAAAACTCTTAAAACCCAAACCTTACTATGCGACATGCTCCTCCGTGATGCTCCTTTTAGTATTGTTACTCAATCTCCTAGCATAATGGATCTTGTGAAGTGTGATGGTGCTGCACTGCTTTATGGTGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAATCACAGGTGAAAGACATTGCAGAGTGGCTACTTAGTAGTCATGGGGACTCAACCGGTTTGAGCACAGATAGTTTGGCCGATGCTGGGTACCCGGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGAATCAATTCAAGAGATGTCTTGTTCTGGTTCAGGTCACACGCTGCAAAGGAAATCAAATGGGGAGGAGCCAAGCATCATCCAGAGGATAAAGATGATGGAGGAAAGATGAACCCACGACTTTCATTTAAAGCATTTCTTGAGGTAGTCAAATGCAAAAGTGTGCCATGGGAAGTATCAGAAATCAATGCTATCCACTCATTACAGATTATAATGAGAGATTCATTCCAAGATGCTGGGAACTGTGGTCCTATAACTCTGACTAATGTGCAGCAGGGGGACACTGATATGGGCGGGAATGGGATAGTTGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAGACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCAAAAATTGCTGAACTGACAGGTCTTCGAACCAGTGAAGCTATGGGAAAATCCCTTGTAAATGAAGTTGTCCATGAGGACTCACGGGAAAATGTTGACAATATTCTAAAAAGAGCTCTGCAAGGTCAGGAGGACAAAAATGTTGAGTTGAAGTTGAAACACTTTGGTCTCCATCAGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTGGGTCAAGATATCACTCATGAGAAATCTGTTCTGGACAAATTTATCAAGTTGGAAGGTGATTACAGAGCTATCATACAGAGTCCCAACCCACTAATTCCTCCTATATTTGCTTCAGATGTGAATGCCTGCTGTTCTGAGTGGAATGTAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAAGTTATAGGGAAAATGCTTCCTGGGGAAATCTTTGGAGGTTTGTGTCGGTTCAAAAGTCAAGATACAATGACTAGTTTCATTATTTTATTGTATCAAGGAATCAGTGGAAAAGATTCAGAGAAGTTCCCATTTGGATTTTTTAATAGAAAAGAGGAACTTGTGGAGGTTCTCTTAACAGTGAACGGGAGGACTGATGCAGGTGGAAATATAATTGGCTGTTTCTGTTTCTTGCAGATTATATCACCAGACCTGCACCGGCCCTCTGAAGAACAAAGGCCACAATGCGGGGTAAGTGATACACCATCAGGAAGGTTTTCAGAATCAAGGAAATTAGGTTATATACTACAAGAGATAAAGAATCCTTTAAATGGAATGCGTTTCACACAAAAACTTCTTCAAAATACAGCTGTCTCAGAAAATCAGAAACAATTTCTTGACACCAGTGATGCTTGTGAGAGGCAAATTATGACAGTTATTGAGGATGCAGATTTTGCAAGTATTGATGAAGGAACTTTGCAGCCAAAAGTGGAGGAGTTTCTTCTTGGAAATATCTTAGATGCCATTGTCAGTCAAGTCATGATCTTGATTAGAGAAAGAAACTTGCAGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTTGCTCTATTCGGTGATCAAATTAGGCTTCAAGTGGTCTTGTCTGACTTTTTGATTAATGTGGTCTGCCATACACCATCTCCCAATGGCTGGGTGGAAATAAAGATTTCACCTGGGCTGAAGATAATACAAGATGGAAGTGAGTTTATTCATCTGCAATTCAGAATGACCCATGCTGGTAAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGTGGGAATCAATGGACGACACAGGAAGGTCTGGGGCTATACATGTCAAGAAAAATCCTCATTAGGATGAATGGCCATGTCAACTATGTAAGAGAACACAACAAGTGTTGCTTCCTCATTGATATTCAACTTAGAACAAGAAAAGAAAGGCAGAGGATTCTTCAAGCAGTAGAGACAAGCATGTTAACTTAG 3420 0.426 MTSKGSKDIEKDASSPSSSFSASPESNMKTSSRIADKDKAIAQYSADAGILAEYEQSGVSGKWFDYSRSVLDAPKSVSDEKMTAYLSRIQRGGLVQPFGCMLTIEEPTFRIIGYSENCFEMLGLNGNPHSKVSLIGVDATSLFTPSSGASLAKAASSREISLLNPIWVCSIATQKPFYAIMHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQALPGGDIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPASDIPQAARFLFKQNRVRMICDCHAKPVKVIQCQELKQPLCLVNSTLRSPHQCHAQYMANMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYMEMQLASQMAEKKTLKTQTLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALLYGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDVLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKCKSVPWEVSEINAIHSLQIIMRDSFQDAGNCGPITLTNVQQGDTDMGGNGIVELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLRTSEAMGKSLVNEVVHEDSRENVDNILKRALQGQEDKNVELKLKHFGLHQQKSVVYIMANACTSRDYTNAVVGVCFVGQDITHEKSVLDKFIKLEGDYRAIIQSPNPLIPPIFASDVNACCSEWNVAMERLTGWKRDEVIGKMLPGEIFGGLCRFKSQDTMTSFIILLYQGISGKDSEKFPFGFFNRKEELVEVLLTVNGRTDAGGNIIGCFCFLQIISPDLHRPSEEQRPQCGVSDTPSGRFSESRKLGYILQEIKNPLNGMRFTQKLLQNTAVSENQKQFLDTSDACERQIMTVIEDADFASIDEGTLQPKVEEFLLGNILDAIVSQVMILIRERNLQLFHEIPDEIKTLALFGDQIRLQVVLSDFLINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGKGLPSEILQEMFEGGNQWTTQEGLGLYMSRKILIRMNGHVNYVREHNKCCFLIDIQLRTRKERQRILQAVETSMLT 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1840 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 388 IPR016132 -
Prci11g1840 1139 SMART HKATPase_4 1008 1122 IPR003594 -
Prci11g1840 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1008 1120 IPR003594 -
Prci11g1840 1139 MobiDBLite consensus disorder prediction 12 30 - -
Prci11g1840 1139 CDD PAS 760 868 IPR000014 -
Prci11g1840 1139 MobiDBLite consensus disorder prediction 1 34 - -
Prci11g1840 1139 SUPERFAMILY GAF domain-like 208 394 - -
Prci11g1840 1139 SUPERFAMILY GAF domain-like 406 583 - -
Prci11g1840 1139 CDD HATPase_Phy-like 1007 1120 IPR044767 -
Prci11g1840 1139 PANTHER OS08G0260000 PROTEIN 81 957 - -
Prci11g1840 1139 SMART pas_2 617 684 IPR000014 -
Prci11g1840 1139 SMART pas_2 748 818 IPR000014 -
Prci11g1840 1139 Gene3D - 209 559 IPR029016 -
Prci11g1840 1139 FunFam Phytochrome 762 870 - -
Prci11g1840 1139 CDD PAS 626 733 IPR000014 -
Prci11g1840 1139 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Prci11g1840 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 953 1116 IPR036890 -
Prci11g1840 1139 FunFam Phytochrome 611 743 - -
Prci11g1840 1139 CDD HisKA 901 951 IPR003661 GO:0000155|GO:0007165
Prci11g1840 1139 Gene3D PAS domain 762 873 - -
Prci11g1840 1139 ProSiteProfiles PAC domain profile. 689 745 IPR000700 -
Prci11g1840 1139 NCBIfam PAS domain S-box protein 622 737 IPR000014 -
Prci11g1840 1139 SMART HisKA_10 896 960 IPR003661 GO:0000155|GO:0007165
Prci11g1840 1139 Pfam PAS fold 84 195 IPR013654 GO:0006355
Prci11g1840 1139 Pfam His Kinase A (phospho-acceptor) domain 901 960 IPR003661 GO:0000155|GO:0007165
Prci11g1840 1139 ProSiteProfiles Histidine kinase domain profile. 903 1122 IPR005467 -
Prci11g1840 1139 SMART gaf_1 228 408 IPR003018 GO:0005515
Prci11g1840 1139 Gene3D - 938 1116 IPR036890 -
Prci11g1840 1139 FunFam Phytochrome 403 533 - -
Prci11g1840 1139 Pfam PAS fold 618 733 IPR013767 GO:0006355
Prci11g1840 1139 Pfam PAS fold 749 870 IPR013767 GO:0006355
Prci11g1840 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Prci11g1840 1139 ProSiteProfiles PAS repeat profile. 746 801 IPR000014 -
Prci11g1840 1139 PIRSF Phytochrome_conventional 15 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Prci11g1840 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 198 IPR035965 -
Prci11g1840 1139 Gene3D - 403 576 IPR043150 -
Prci11g1840 1139 Pfam GAF domain 228 397 IPR003018 GO:0005515
Prci11g1840 1139 Gene3D PAS domain 88 331 - -
Prci11g1840 1139 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Prci11g1840 1139 ProSiteProfiles PAS repeat profile. 615 686 IPR000014 -
Prci11g1840 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 729 IPR035965 -
Prci11g1840 1139 Gene3D PAS domain 617 738 - -
Prci11g1840 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 865 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1840 Prci-Chr11 15421276 15427707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1840 21 1122 Histidine Kinase Gene Family AT4G18130 62.444 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1840 K12123 - gmx:100808192 1759.96