Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1839 ATGACGAGCAAAGGAAGCAAAGATATAGAGAAGGACGCGTCCTCGCCTTCTTCCTCCTTCTCAGCGTCACCTGAGAGCAACATGAAGACCAGCTCCAGAATTGCTGATAAAGACAAAGCAATTGCTCAGTACAGTGCTGACGCGGGGATCTTGGCTGAGTATGAGCAATCTGGTGTGTCGGGAAAGTGGTTCGATTACTCGAGGTCGGTTCTTGATGCTCCGAAATCTGTGTCGGACGAGAAAATGACGGCTTACTTGTCGAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGTTGTATGCTTACAATAGAAGAACCCACTTTTCGGATTATTGGGTACAGTGAGAATTGTTTTGAAATGTTGGGTTTAAACGGAAATCCTCATTCGAAAGTGAGTCTGATTGGAGTTGATGCTACTTCCCTATTCACGCCTTCTTCCGGGGCTTCACTTGCAAAAGCTGCGTCATCTAGGGAAATTTCTCTTCTAAATCCCATTTGGGTCTGTTCCATAGCAACCCAGAAGCCTTTTTATGCCATAATGCATCGGATTGATGTGGGAATTGTAATTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCTGGCGCTGTACAGTCTCAGAAACTGGCTGTACGGGCAATTTCAAGGTTGCAAGCTCTTCCTGGGGGAGATATTGGTGCTTTGTGCGATACTGTTGTTGAAGAAGTTCAAAAGCTTACTGGATATGACAGGGTTATGGTGTATAAGTTCCATAAGGATGATCATGGGGAGGTTGTGTCTGAAATCAGGAGGTCAGATTTAGAACCCTTTTTGGGTTTGCATTATCCTGCCTCGGATATCCCTCAAGCCGCTCGCTTCTTGTTTAAGCAGAACCGAGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAATGTCAAGAGTTAAAGCAGCCTCTCTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCATGCACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTTGTTATGGCAGTTATTGTCAATGGAAATGATACCACAAAGCTTTGGGGATTGCTTGTTTGTCACCACACTTCACCGCGTCATGTCCCTTTCCCACTTCGCTATGCTTGTGAGTTCCTGATGCAGGCTTTTGGCCTGCAGCTTTACATGGAGATGCAATTAGCATCACAGATGGCCGAGAAGAAAACTCTTAAAACCCAAACCTTACTATGCGACATGCTCCTCCGTGATGCTCCTTTTAGTATTGTTACTCAATCTCCTAGCATAATGGATCTTGTGAAGTGTGATGGTGCTGCACTGCTTTATGGTGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAATCACAGGTGAAAGACATTGCAGAGTGGCTACTTAGTAGTCATGGGGACTCAACCGGTTTGAGCACAGATAGTTTGGCCGATGCTGGGTACCCGGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCAAGAATCAATTCAAGAGATGTCTTGTTCTGGTTCAGGTCACACGCTGCAAAGGAAATCAAATGGGGAGGAGCCAAGCATCATCCAGAGGATAAAGATGATGGAGGAAAGATGAACCCACGACTTTCATTTAAAGCATTTCTTGAGGTAGTCAAATGCAAAAGTGTGCCATGGGAAGTATCAGAAATCAATGCTATCCACTCATTACAGATTATAATGAGAGATTCATTCCAAGATGCTGGGAACTGTGGTCCTATAACTCTGACTAATGTGCAGCAGGGGGACACTGATATGGGCGGGAATGGGATAGTTGAACTCAGTTCAGTGGCATTTGAAATGGTTAGATTAATTGAGACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGCTGGTATAATCAATGGATGGAATGCAAAAATTGCTGAACTGACAGGTCTTCGAACCAGTGAAGCTATGGGAAAATCCCTTGTAAATGAAGTTGTCCATGAGGACTCACGGGAAAATGTTGACAATATTCTAAAAAGAGCTCTGCAAGGTCAGGAGGACAAAAATGTTGAGTTGAAGTTGAAACACTTTGGTCTCCATCAGCAAAAATCAGTTGTATATATTATGGCCAATGCCTGCACAAGTAGGGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTGGGTCAAGATATCACTCATGAGAAATCTGTTCTGGACAAATTTATCAAGTTGGAAGGTGATTACAGAGCTATCATACAGAGTCCCAACCCACTAATTCCTCCTATATTTGCTTCAGATGTGAATGCCTGCTGTTCTGAGTGGAATGTAGCCATGGAAAGGCTAACTGGTTGGAAGAGAGATGAAGTTATAGGGAAAATGCTTCCTGGGGAAATCTTTGGAGGTTTGTGTCGGTTCAAAAGTCAAGATACAATGACTAGTTTCATTATTTTATTGTATCAAGGAATCAGTGGAAAAGATTCAGAGAAGTTCCCATTTGGATTTTTTAATAGAAAAGAGGAACTTGTGGAGGTTCTCTTAACAGTGAACGGGAGGACTGATGCAGGTGGAAATATAATTGGCTGTTTCTGTTTCTTGCAGATTATATCACCAGACCTGCACCGGCCCTCTGAAGAACAAAGGCCACAATGCGGGGTAAGTGATACACCATCAGGAAGGTTTTCAGAATCAAGGAAATTAGGTTATATACTACAAGAGATAAAGAATCCTTTAAATGGAATGCGTTTCACACAAAAACTTCTTCAAAATACAGCTGTCTCAGAAAATCAGAAACAATTTCTTGACACCAGTGATGCTTGTGAGAGGCAAATTATGACAGTTATTGAGGATGCAGATTTTGCAAGTATTGATGAAGGAACTTTGCAGCCAAAAGTGGAGGAGTTTCTTCTTGGAAATATCTTAGATGCCATTGTCAGTCAAGTCATGATCTTGATTAGAGAAAGAAACTTGCAGCTCTTTCATGAAATTCCTGATGAAATCAAAACACTTGCTCTATTCGGTGATCAAATTAGGCTTCAAGTGGTCTTGTCTGACTTTTTGATTAATGTGGTCTGCCATACACCATCTCCCAATGGCTGGGTGGAAATAAAGATTTCACCTGGGCTGAAGATAATACAAGATGGAAGTGAGTTTATTCATCTGCAATTCAGGAAATGTTTGAAGGTGGGAATCAATGGACGACACAGGAAGGTCTGGGGCTATACATGTCAAGAAAAATCCTCATTAGGATGA 3255 0.428 MTSKGSKDIEKDASSPSSSFSASPESNMKTSSRIADKDKAIAQYSADAGILAEYEQSGVSGKWFDYSRSVLDAPKSVSDEKMTAYLSRIQRGGLVQPFGCMLTIEEPTFRIIGYSENCFEMLGLNGNPHSKVSLIGVDATSLFTPSSGASLAKAASSREISLLNPIWVCSIATQKPFYAIMHRIDVGIVIDLEPARSSDHALSLAGAVQSQKLAVRAISRLQALPGGDIGALCDTVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPASDIPQAARFLFKQNRVRMICDCHAKPVKVIQCQELKQPLCLVNSTLRSPHQCHAQYMANMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLYMEMQLASQMAEKKTLKTQTLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALLYGGNCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDVLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVVKCKSVPWEVSEINAIHSLQIIMRDSFQDAGNCGPITLTNVQQGDTDMGGNGIVELSSVAFEMVRLIETATVPIFGVDSAGIINGWNAKIAELTGLRTSEAMGKSLVNEVVHEDSRENVDNILKRALQGQEDKNVELKLKHFGLHQQKSVVYIMANACTSRDYTNAVVGVCFVGQDITHEKSVLDKFIKLEGDYRAIIQSPNPLIPPIFASDVNACCSEWNVAMERLTGWKRDEVIGKMLPGEIFGGLCRFKSQDTMTSFIILLYQGISGKDSEKFPFGFFNRKEELVEVLLTVNGRTDAGGNIIGCFCFLQIISPDLHRPSEEQRPQCGVSDTPSGRFSESRKLGYILQEIKNPLNGMRFTQKLLQNTAVSENQKQFLDTSDACERQIMTVIEDADFASIDEGTLQPKVEEFLLGNILDAIVSQVMILIRERNLQLFHEIPDEIKTLALFGDQIRLQVVLSDFLINVVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRKCLKVGINGRHRKVWGYTCQEKSSLG 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1839 1084 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 388 IPR016132 -
Prci11g1839 1084 MobiDBLite consensus disorder prediction 12 30 - -
Prci11g1839 1084 CDD PAS 760 868 IPR000014 -
Prci11g1839 1084 MobiDBLite consensus disorder prediction 1 34 - -
Prci11g1839 1084 Pfam PAS fold 749 870 IPR013767 GO:0006355
Prci11g1839 1084 Pfam PAS fold 618 733 IPR013767 GO:0006355
Prci11g1839 1084 PANTHER OS08G0260000 PROTEIN 81 957 - -
Prci11g1839 1084 Gene3D - 938 1066 IPR036890 -
Prci11g1839 1084 Pfam GAF domain 228 397 IPR003018 GO:0005515
Prci11g1839 1084 SMART pas_2 617 684 IPR000014 -
Prci11g1839 1084 SMART pas_2 748 818 IPR000014 -
Prci11g1839 1084 FunFam Phytochrome 403 533 - -
Prci11g1839 1084 Pfam Phytochrome region 411 584 IPR013515 GO:0006355|GO:0009584
Prci11g1839 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 198 IPR035965 -
Prci11g1839 1084 CDD PAS 626 733 IPR000014 -
Prci11g1839 1084 FunFam Phytochrome 611 743 - -
Prci11g1839 1084 FunFam Phytochrome 762 870 - -
Prci11g1839 1084 Gene3D - 209 559 IPR029016 -
Prci11g1839 1084 CDD HisKA 901 951 IPR003661 GO:0000155|GO:0007165
Prci11g1839 1084 ProSiteProfiles PAC domain profile. 689 745 IPR000700 -
Prci11g1839 1084 Pfam His Kinase A (phospho-acceptor) domain 901 960 IPR003661 GO:0000155|GO:0007165
Prci11g1839 1084 SMART HisKA_10 896 960 IPR003661 GO:0000155|GO:0007165
Prci11g1839 1084 SUPERFAMILY GAF domain-like 208 394 - -
Prci11g1839 1084 Gene3D PAS domain 617 738 - -
Prci11g1839 1084 NCBIfam PAS domain S-box protein 622 737 IPR000014 -
Prci11g1839 1084 SMART gaf_1 228 408 IPR003018 GO:0005515
Prci11g1839 1084 Pfam PAS fold 84 195 IPR013654 GO:0006355
Prci11g1839 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 865 IPR035965 -
Prci11g1839 1084 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Prci11g1839 1084 ProSiteProfiles Histidine kinase domain profile. 903 1039 IPR005467 -
Prci11g1839 1084 ProSiteProfiles PAS repeat profile. 746 801 IPR000014 -
Prci11g1839 1084 Gene3D PAS domain 88 331 - -
Prci11g1839 1084 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Prci11g1839 1084 Gene3D PAS domain 762 873 - -
Prci11g1839 1084 ProSiteProfiles PAS repeat profile. 615 686 IPR000014 -
Prci11g1839 1084 Gene3D - 403 576 IPR043150 -
Prci11g1839 1084 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 729 IPR035965 -
Prci11g1839 1084 SUPERFAMILY GAF domain-like 406 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1839 Prci-Chr11 15421276 15427708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1839 21 1058 Histidine Kinase Gene Family AT4G18130 62.819 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1839 K12123 - gmx:100808192 1641.71