Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1778 ATGACAATGGAATTTTATGCACACACTCCGCTTGACGAGAATGAAGCGAGTCAGCCGCTGGTAGATGAGAATGAAACACGTCAGGCTCCACTAGACAAGAATGCTCATGATGACATTGTTAGAGTGTTGAACACCGCACTCGAGTTCATAAGAAAAGTGGGTCCAGCTCTGCTTGATGAGAATGAAGAGGGTCCGACTCCCCTAGACGAGAGTGAAACAAGTCAGGCTCTGCTATATGAAAATGAAGCAGGTGAGGCTCCACTTGACAAGAATGAAGCAAATCAAGCTCCACTATGTGAGAATGAAGTGGGTCAAGCTCGAGTTCCTCCCATACATCCAGAGAATTGGCCTTCCAACTGGAATTCAATGAATCAGACTTCATTGAACTTGGAGCCACCAAACAATATTGGCACCAAGAAAAGAAAATGGGCTTTGGCTGAACACATACGCTTCCTAGATGGATTGACGACATATGGGAAGGGAAAATGGACTGCCATTTCTCAAAATGTGGTGCTAACAAGAACAACAGCTCAAGTAGCTAGTCATGCTCAGAAATACTATGAACACCAAGCTAATCGAGTCAACAAAAAGAGTGAAAGAGGCAGTATATATGATTTTACCACAGACATGCTTGTCCGTCCTATGGATCAAAACCAGAACCATGCCATTCCATCAATGCATCAATTAGAGCCACAAAATCTTTCACATGAGGTTCCAATGCACCAATCACAGCTAGTGCATCAATTTAACTTACAGGTTCCTTATGATATTTCAAGGCATCACTCAACCCCAATGTATCGGCCAACTGTTCCAATGCAAATTCAACCTCCATTAAATCAGTCTAACTCACAAAATATCACGAAGGCAAATCCTGCCTGCATGGCAGAATTGGACCCTTCTTATGCTCACTCAACTCCCCAACATCAAGGGTTGTCACAGTTGACATCTGTGTTTTCATTCGACCCTAGGTTCTCTAATAGGCAACAATTGGTGAATCAATCTCCATTCAACTCAAAGGCACCAACAACTATCCATACCCAAATCAACAAGGGAACCCGATGGACTGAAGAAGAACACCTGTTATTTGTGGACGGATTGCAAAGATATAGGAAGGGAGATTGGAAGAACATTTCCAAAATGTTGTGCGGACCAGGACGCCAACTCAGATTGCCAGTCATGCTCAGAAATACTTTAATCGCCAAGCTAAGAAAGGGAACAACAACAAGGATTATCCTACTACGAAAGGGAACAAAAAGAGAGAAAGAAAAAGCATCCATGATATCACCATTCATGATGTTTATGTTGAAGCTCAACAACAAAATCAAATGA 1329 0.4244 MTMEFYAHTPLDENEASQPLVDENETRQAPLDKNAHDDIVRVLNTALEFIRKVGPALLDENEEGPTPLDESETSQALLYENEAGEAPLDKNEANQAPLCENEVGQARVPPIHPENWPSNWNSMNQTSLNLEPPNNIGTKKRKWALAEHIRFLDGLTTYGKGKWTAISQNVVLTRTTAQVASHAQKYYEHQANRVNKKSERGSIYDFTTDMLVRPMDQNQNHAIPSMHQLEPQNLSHEVPMHQSQLVHQFNLQVPYDISRHHSTPMYRPTVPMQIQPPLNQSNSQNITKANPACMAELDPSYAHSTPQHQGLSQLTSVFSFDPRFSNRQQLVNQSPFNSKAPTTIHTQINKGTRWTEEEHLLFVDGLQRYRKGDWKNISKMLCGPGRQLRLPVMLRNTLIAKLRKGTTTRIILLRKGTKREKEKASMISPFMMFMLKLNNKIK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1778 442 Pfam Myb-like DNA-binding domain 353 382 IPR001005 -
Prci11g1778 442 Pfam Myb-like DNA-binding domain 140 186 IPR001005 -
Prci11g1778 442 Gene3D - 141 192 - -
Prci11g1778 442 SMART sant 350 404 IPR001005 -
Prci11g1778 442 SMART sant 139 189 IPR001005 -
Prci11g1778 442 MobiDBLite consensus disorder prediction 1 21 - -
Prci11g1778 442 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 190 IPR006447 GO:0003677
Prci11g1778 442 CDD SANT 353 386 IPR001005 -
Prci11g1778 442 ProSiteProfiles Myb-like domain profile. 353 386 IPR001005 -
Prci11g1778 442 PANTHER TRANSCRIPTION FACTOR KUA1 91 301 - -
Prci11g1778 442 SUPERFAMILY Homeodomain-like 348 386 IPR009057 -
Prci11g1778 442 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Prci11g1778 442 CDD SANT 142 186 IPR001005 -
Prci11g1778 442 Gene3D - 353 397 - -
Prci11g1778 442 SUPERFAMILY Homeodomain-like 139 191 IPR009057 -
Prci11g1778 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1778 Prci-Chr11 14954597 14956709 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g1778 Myb_DNA-binding 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1778 - - pcin:129285062 555.829