Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1776 ATGGAACTACTATGGAGTGACATGGACTATGACTATGAATATGAGTATGAGCAGCTTATGAAAGATCCCGAATCAACTGTTACAATGTTTTGTGATGACAATATTGGGTTGAAGAATGAAGCGGGTCAGTCTCTATTTGGTGAGAATGAAGTGAGTCAAGCACCACAAGACGAAAATGAAGCAGGTCAAGCTTCGCGTGACAAGAATGAAATGGGTCAAGCACCACTCGATGAGAATGAATTGAGTCAAGTAGCACTAGACGAAAATGAAGCAAGTGAAGCTCCACTAGACAAGGACTTTCTTAGATCAATTTCTATATCATTATGTGAGAGTCTTGGGTTGATGAAAGAAGTGAGTCAGGCTCCAGTTGATGACAATGAAGCAGATCAAACTCTACTTGAAGAGGATGAATTGTTTCATGCTCTCCTAGGCGAGAATGAAACAGGTCAGGCTCTACTTAACGAGAATGAAGACAGTCAGGCTCTCCTAAATGAGCATGAAGCAAGTCAGGCTCATCTGAATGAGAATGAAACAGGTCAGGCTCAAGTCCCACCCATGTACCCAAACACTTGGCCTTCCAACTGGAACTCAACGAATCAGATTTCATTGGACTTGGAGCCACCAAACAATACTAGCACCAAGAAAAAGAAATGGGATTTGGCTGAACACATACTCTTCCTAAATGGATTGACGACATATGGGAAGGGAAAATGGACTGCCATTTCTAAAAATGTGGTGCTGACAAGAACAACAGCTCAAGTAGCTAGTCATGCTCAGAAATACTATAAACACCAAATTGATCGAAGAAACAAAAGGAGCAAAAGAGCCAGCATATATGATTTTACCACAGACATGCTTGTGGACCCTATGAATCAAAACCAGAACCATGCCATTCCATCAATGCATCAACTAGAGCCACAAAATCTTTCACGTGAGGTTCCAATGCACCAATCACGGCCAGGGCATCAATTTAACTTACAGGCTCCTTATGATATTCCAAGACATCAGTCAACCCCAATGAATCAGCCAACTGTTCCAATGCAAATTCAACCTCCATTAAATCAGTTTAACTCACAAAATATCATGAAGGCAAATCCTGCTTGCATGGCAGAATTGAACCCTTCTCACACTCACTCAACTCCCCAACCACATCAAGGGTTATCACAGTTGACATCTGTGTTTTCATTTGACCCTGGGTTCTCTAATAGGCAACAATTGGTGAATCAACCTTCATTCAACTTAAAGGCACCAACAACTATCCATACCCAAATCAACAAGGGAACCCGATGGACTGAAGAAGAACACCTGCTATTTCTGGATGGATTGCAAAGATATAGGAAGGGAGATTGGAAGAACATTTCCAAATATGTTGTGTGGACAAGGACGCCAACTCAGATTGCCAGTCATGCTCAGAAATACTTTAACCGCCAAGCTAAGAAAGGGATCAACAACAACAAGCATTATCCTACTGCGAAACGGAACAAGAAGAGAGAAAGAAAAAGCATCCATGATATCACCATTCATGATGTTTATGTCGAAGCTCAACAACAAAATCAAATGATGGCTTCTTCATATACTCAAAACCAGATTGTTCCTCCAGGTCTTCCCATAGATGAATCTTATATCCCACAAAATCGCCTAAATTTTAATCAGTCCCTTCAATTTGGGCACCCAAACAGCACCTTTCTTGTGTAA 1695 0.4124 MELLWSDMDYDYEYEYEQLMKDPESTVTMFCDDNIGLKNEAGQSLFGENEVSQAPQDENEAGQASRDKNEMGQAPLDENELSQVALDENEASEAPLDKDFLRSISISLCESLGLMKEVSQAPVDDNEADQTLLEEDELFHALLGENETGQALLNENEDSQALLNEHEASQAHLNENETGQAQVPPMYPNTWPSNWNSTNQISLDLEPPNNTSTKKKKWDLAEHILFLNGLTTYGKGKWTAISKNVVLTRTTAQVASHAQKYYKHQIDRRNKRSKRASIYDFTTDMLVDPMNQNQNHAIPSMHQLEPQNLSREVPMHQSRPGHQFNLQAPYDIPRHQSTPMNQPTVPMQIQPPLNQFNSQNIMKANPACMAELNPSHTHSTPQPHQGLSQLTSVFSFDPGFSNRQQLVNQPSFNLKAPTTIHTQINKGTRWTEEEHLLFLDGLQRYRKGDWKNISKYVVWTRTPTQIASHAQKYFNRQAKKGINNNKHYPTAKRNKKRERKSIHDITIHDVYVEAQQQNQMMASSYTQNQIVPPGLPIDESYIPQNRLNFNQSLQFGHPNSTFLV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1776 564 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 265 IPR006447 GO:0003677
Prci11g1776 564 NCBIfam myb-like DNA-binding domain, SHAQKYF class 425 477 IPR006447 GO:0003677
Prci11g1776 564 SMART sant 214 264 IPR001005 -
Prci11g1776 564 SMART sant 426 476 IPR001005 -
Prci11g1776 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 266 IPR017930 -
Prci11g1776 564 ProSiteProfiles SANT domain profile. 428 483 IPR017884 -
Prci11g1776 564 MobiDBLite consensus disorder prediction 49 72 - -
Prci11g1776 564 Gene3D - 216 266 - -
Prci11g1776 564 CDD SANT 429 474 IPR001005 -
Prci11g1776 564 Gene3D - 429 479 - -
Prci11g1776 564 PANTHER TRANSCRIPTION FACTOR KUA1 425 526 - -
Prci11g1776 564 ProSiteProfiles Myb-like domain profile. 210 262 IPR001005 -
Prci11g1776 564 FunFam transcription factor MYB1R1 428 479 - -
Prci11g1776 564 Pfam Myb-like DNA-binding domain 215 261 IPR001005 -
Prci11g1776 564 Pfam Myb-like DNA-binding domain 429 474 IPR001005 -
Prci11g1776 564 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Prci11g1776 564 CDD SANT 217 261 IPR001005 -
Prci11g1776 564 ProSiteProfiles Myb-like domain profile. 429 474 IPR001005 -
Prci11g1776 564 SUPERFAMILY Homeodomain-like 425 479 IPR009057 -
Prci11g1776 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 422 478 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1776 Prci-Chr11 14936247 14939610 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g1776 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1776 - - pcin:129285062 1153.27