Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1774 ATGGACTACGAGTATACATTAGAGCAACTTACCAAAGATCTTGGAATAGTTGTTAAAAGCTTCTATGAAGACAATACTGGGTCAAAGAATGAAGCGAGTCAGGCTCTACTTGATGACAATGAAGTAGATCAAACTCTGCTTGAAGAGGATGAAGTGGTTCAGGCTCTCCTAGGTGAGAATGAAACAAGCCAGGCTCTGCTTAACGAAAATGAAGAGAGTCAGGCTCTCCTAAATGAGCTTGAAGCAAGTCAGGCTCCCCTTAATGAGAATGAAGCAGGTCAAGCTCAAGTCCCACCCATGTACCCAAGCACTTGGCCTTCCAACTGGAATTCAACGAAGCAGATTTCATTGAACTTGGAGCCACCAAACAATACTGGCACCAAGAAAAAGAAATGGGCTTTGGCTGAACACATATGCTTCCTGCGTGGATTGCAGCAATATGGGAAGGGAAAATGGACTGCCATTTCTAAAAATGTGGTGCTGACAAGAACACCAGCTCAAGTAGCCAGTCATGCTCAGAAATACTATAAACACCAAATTGATCGAGGAAACAAAAAGAGCAAAAGAGGCAGCATATATGATTTTACCATAGACATGCTTGTGGACCCTATGAATCAAAACGAGAACCATGCCATTCCATCAATGCATCAATTAGGACCACAAAATCTTTCACATGAGCCTCCAACGCACCAATCATGGCCAGTGCATCAATCAACCCTAATGAATCGGCCTACTGTTCCAATGCAAATTCAACCTTCATTAAATCAGCCTAACTCACAAAATATTATGAAGGTGAATCCTGCTTGCATGGCAGAATTGGACCCATCTCACGCTCACTCAACTCCCCAACCACATCAAGGGTTATCACAGTTGACATCTGTGTTTTCATTCGGCCCTGGGTTCTCTAATGGGCAACAATTGGTAAATCAACCTTCATTCAACTCTAAGGCACTGACAACTATCCATACCCAAATCAACAAGGGAACCCGATGGACTGAAGAAGAACACCTGTTATTTGTGGATGGATTGGAAAGATACGGGAAGGGAGATTGGAAGAACATTTCTAGATATGTTGTGCAGACAAGGTCGCCAACTCAGATTGCTAGTCACGCTCAGAAATACTTTAATCGCCAAGCAAAGAAAGGGAACAACAACAACAAGCATTATCCTACTACGAAAGGGAGCAAAAAGAGGGAAAGAAAAAGCATCCATGATGTCACCATTCATGATATTTATGTCGAAGCTCAACAACAAAATCAAATGATGGCTTCTTCATATCCTCAAAACCAGATTGTTCCTCCAAGTCTTCCCATAGATGAATCCTGTAACCCACAAAATTGCCTAAATTTTGATCGGTCCCTTCAATTTGGGTACCCAAGTAGCGCCTTTCTTATGTAA 1398 0.4227 MDYEYTLEQLTKDLGIVVKSFYEDNTGSKNEASQALLDDNEVDQTLLEEDEVVQALLGENETSQALLNENEESQALLNELEASQAPLNENEAGQAQVPPMYPSTWPSNWNSTKQISLNLEPPNNTGTKKKKWALAEHICFLRGLQQYGKGKWTAISKNVVLTRTPAQVASHAQKYYKHQIDRGNKKSKRGSIYDFTIDMLVDPMNQNENHAIPSMHQLGPQNLSHEPPTHQSWPVHQSTLMNRPTVPMQIQPSLNQPNSQNIMKVNPACMAELDPSHAHSTPQPHQGLSQLTSVFSFGPGFSNGQQLVNQPSFNSKALTTIHTQINKGTRWTEEEHLLFVDGLERYGKGDWKNISRYVVQTRSPTQIASHAQKYFNRQAKKGNNNNKHYPTTKGSKKRERKSIHDVTIHDIYVEAQQQNQMMASSYPQNQIVPPSLPIDESCNPQNCLNFDRSLQFGYPSSAFLM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1774 465 CDD SANT 330 375 IPR001005 -
Prci11g1774 465 CDD SANT 131 175 IPR001005 -
Prci11g1774 465 ProSiteProfiles Myb-like domain profile. 330 375 IPR001005 -
Prci11g1774 465 FunFam transcription factor MYB1R1 329 380 - -
Prci11g1774 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Prci11g1774 465 SMART sant 128 178 IPR001005 -
Prci11g1774 465 SMART sant 327 377 IPR001005 -
Prci11g1774 465 MobiDBLite consensus disorder prediction 380 401 - -
Prci11g1774 465 NCBIfam myb-like DNA-binding domain, SHAQKYF class 326 378 IPR006447 GO:0003677
Prci11g1774 465 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 179 IPR006447 GO:0003677
Prci11g1774 465 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
Prci11g1774 465 SUPERFAMILY Homeodomain-like 124 184 IPR009057 -
Prci11g1774 465 Pfam Myb-like DNA-binding domain 129 175 IPR001005 -
Prci11g1774 465 Pfam Myb-like DNA-binding domain 330 375 IPR001005 -
Prci11g1774 465 SUPERFAMILY Homeodomain-like 326 380 IPR009057 -
Prci11g1774 465 ProSiteProfiles SANT domain profile. 329 384 IPR017884 -
Prci11g1774 465 Coils Coil 63 83 - -
Prci11g1774 465 Gene3D - 329 380 - -
Prci11g1774 465 Gene3D - 130 180 - -
Prci11g1774 465 PANTHER TRANSCRIPTION FACTOR KUA1 326 426 - -
Prci11g1774 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 323 379 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1774 Prci-Chr11 14922878 14924912 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g1774 Myb_DNA-binding 6.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1774 - - pcin:129286170 958.362