Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1754 ATGATTTGTTTTGTTGAGCCAGAGTTGTCATGTTTACAGAAAAAGGATACTAGTAAGAAACCAAGTCCATTGAGAATCAAGAGATCAACCTTTTCTCAATCTGAAGCCTTTAACAAGGCAAAAGAAATCCAGCAAAACCTATCCCAAGAGCATCCCAGCGTTATTAAATCCATGCTACCTTCGCACGGCCTTCCTAAACGTTTTTGTGAGATGCATTTGCCCAAGGCTGATACTATGGTTGTTTTGGAAGACGAGAACGGAAGAGAATATGAAACAAAGTATCTTATAGAAAAGATGGGCTTAAGTGGTGGTTGGAGAGGATTCTCCATAGCTCACAATTTACTTGAAGGAGATGTTTTAGTCTTTCATTTAATCGAGCCTTTGAAGTTCAAGGTATACATCATAAGGTCTCATAATGGGTCAACTGAAGAAGGTCATGTTCTTAGACTTCCATACTTAGATGGAAGCACGAATCAACGTGATTCTAATGTTCATCAAGAAGGCAATCCAGATGGTGGCAAGATAATATGTGATGCTAGCATGCCACCATCAAATCAATATGAAAATAACGATCTAGATGAAAACTTGGATCTTGAGGTTTTAAATGACAATAGAATCTCAAAATCTCCTGTGACTTTCCAAAATGTCACAAGCATAGAAAATTTTAGTATTGTTGTTAATGGCCTAGTACTTGATTCAGAACTATCTGAACACCTTAAGGCCAAGTACTATAAGCTATGCTGCAGTCAAGAAATGTTTCTTCATGAGAATCTTCTTGAAAATCAGAATTGTCAGCTAGTTGTTGGAATAATTTGCGAAACCATAAATATTGCTGATGCTATTAAAGCCAGCAAGATCACAACCCCTTTAAAAGATTTTGCTGTGTGGCATAAAAGCTTGAAAGGTCTTGAATGGTTTGGCATGAATGTTCGCTTCTTACTTGATAAGTTGGAACAGCTCATGGATTTAGCTTCAAGATTTGAGAGGCATGCAAAGGCAAGAAGTGAACGAGACCAGGCTAAAGAGGAGAAGAAACTTCTTGAACTTAAGCTTAAAAAAGTAAAGGAGACCTTAAACAAACTTGATAGTGAGCTTGACTCACACAATATGAACTTGGAGAGATTGGAGGCTAAGTTTCAGGATTTGGCTGATACTGCATGGTAA 1164 0.3763 MICFVEPELSCLQKKDTSKKPSPLRIKRSTFSQSEAFNKAKEIQQNLSQEHPSVIKSMLPSHGLPKRFCEMHLPKADTMVVLEDENGREYETKYLIEKMGLSGGWRGFSIAHNLLEGDVLVFHLIEPLKFKVYIIRSHNGSTEEGHVLRLPYLDGSTNQRDSNVHQEGNPDGGKIICDASMPPSNQYENNDLDENLDLEVLNDNRISKSPVTFQNVTSIENFSIVVNGLVLDSELSEHLKAKYYKLCCSQEMFLHENLLENQNCQLVVGIICETINIADAIKASKITTPLKDFAVWHKSLKGLEWFGMNVRFLLDKLEQLMDLASRFERHAKARSERDQAKEEKKLLELKLKKVKETLNKLDSELDSHNMNLERLEAKFQDLADTAW 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1754 387 Gene3D - 32 139 IPR015300 -
Prci11g1754 387 CDD B3_DNA 52 136 IPR003340 GO:0003677
Prci11g1754 387 SUPERFAMILY DNA-binding pseudobarrel domain 48 137 IPR015300 -
Prci11g1754 387 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 140 IPR044837 -
Prci11g1754 387 Pfam B3 DNA binding domain 63 136 IPR003340 GO:0003677
Prci11g1754 387 Coils Coil 330 385 - -
Prci11g1754 387 SMART B3_2 54 138 IPR003340 GO:0003677
Prci11g1754 387 ProSiteProfiles B3 DNA-binding domain profile. 64 138 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1754 Prci-Chr11 14713224 14715225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1754 25 169 B3 DNA Binding Superfamily AT3G19184 40.789 1.77e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci11g1754 B3 3.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1754 - - pcin:129286163 741.11