Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1721 ATGGGGCGAGGAAGATTAGCGATGAAACTGATAGAAAAAGAGAAATCCAGAAAAGCGACGTTTCAAAAGAGGAAGAATGGAATCATGAAAAAAGCTCACGAGCTCTCTACACTATGTGGTGTTGACTGTTGCTTGGTCGTCTATGGTCCTAACTCCGTCGACAACCTTCCTGAAATTTGGCCTCGAGATCCCAGAGAGGTGCATAGAATCATTAAGAAGTATGAGGTCAAGATCGCTGAGAAAAGTCCCAAGAAGTACAACGTCATGGAGTTCTTCAAGGACAGGAAGAACAAAGTTGAAGCCGAAGCGAGCAAGCTTCAAAAGGAGAGGCTCCGAAAACTTTATCCGACGTGGGATTCCTCTTTCGACAGACTTGACGAAGAACACCTGAGGATGTTCGTCGCTTTGTTGGATTCCAAGATCGAAGATTGCAAGGGGAGGATCAACATGTTGAAGAAGAAGCGTTACATAGAGGAAAAACAAGGAGCAGAATCCTCACAACTCAAATCAACTTCAAATAACCGAAGCCATCTCAGTTTCATGCACAATAACACTACGTCGTTTCATCAAACTCTAGATTTCCCTCCCAAATCTGATGATGATGATCATCATCATTGTGTGATGATGCCTTTTCATCCGAATCTGATGCATCTGAATGATTCTGGAACACAGAATGAAGCCTTTGGTCCTTATGATCCCAGAGATTCTTGTCCTTCATCATGCTTTTACAATATTAATGGTTACTATCCTTATCTGCATCAGAATAATAATGTTATGCAGCATCATCATGAAGCAAATTTGCAGGTCCTTCAAGCTCCTTTGATGATGCAAGAATTTCAGACCAAGTACGGATACCATCATGATCTGCTTCAAGCTCATGAGATGTTCAACTGTATGGGCCAAAAGAAGTAA 912 0.4189 MGRGRLAMKLIEKEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLVVYGPNSVDNLPEIWPRDPREVHRIIKKYEVKIAEKSPKKYNVMEFFKDRKNKVEAEASKLQKERLRKLYPTWDSSFDRLDEEHLRMFVALLDSKIEDCKGRINMLKKKRYIEEKQGAESSQLKSTSNNRSHLSFMHNNTTSFHQTLDFPPKSDDDDHHHCVMMPFHPNLMHLNDSGTQNEAFGPYDPRDSCPSSCFYNINGYYPYLHQNNNVMQHHHEANLQVLQAPLMMQEFQTKYGYHHDLLQAHEMFNCMGQKK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1721 303 Coils Coil 89 109 - -
Prci11g1721 303 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g1721 303 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g1721 303 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Prci11g1721 303 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Prci11g1721 303 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Prci11g1721 303 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Prci11g1721 303 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Prci11g1721 303 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Prci11g1721 303 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1721 Prci-Chr11 14409817 14411282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1721 1 147 Type I MADS-box Gene Family AT5G55690 36.424 2.53e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g1721 SRF-TF 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1721 - - pcin:129285084 640.573