Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1689 ATGGCTGCCTCCACCATGGCTCTGTCTTCCCCATCCTTTGCCGGTAAGGCCGTACCACTTGCTCCCTCCGCCACTGAGACTGGCCGCATCTCCATGAGGAAGACTGTCACCAAGCCTGTCTCCTCTGGAAGCCCGTGGTACGGCCCGGACCGTGTCAAGTACTTGGGTCCATTCTCTGGTGAGCCCCCATCCTACTTGACCGGTGAGTTCCCTGGTGACTATGGTTGGGACACCGCTGGGCTCTCAGCTGACCCGGAGACCTTCGCCAGGAACCGTGAGCTTGAAGTTATCCATGCCAGGTGGGCCATGCTCGGAGCTTTGGGATGTGTCTTCCCTGAGCTCTTGGCCCGCAATGGTGTCAAATTCGGCGAGGCCGTGTGGTTCAAGGCTGGATCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTAGGCAACCCAAGCTTGATCCACGCACAGAGCATCCTTGCCATCTGGGCTTGCCAAGTGATCTTGATGGGTGCCGTTGAGGGTTTCCGTATTGCCGGTGGACCTCTCGGTGAGGTTACAGACCCACTCTACCCAGGTGGAAGTTTTGACCCATTGGGACTTGCTGATGATCCAGAGGCTTTCGCTGAGTTGAAGGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCAATGTTTGGATTCTTTGTTCAGGCCATCGTGACCGGAAAAGGTCCATTGGAGAACCTTGCCGACCACCTTGCCGACCCAGTCAACAACAATGCCTGGGCCTATGCTACAAACTTCGTCCCCGGAAATAAAGTCGCCGGATCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTAGGCAACCCAAGCTTGATCCACGCACAGAGCATCCTTGCCATCTGGGCCTGCCAAGTGATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGACCTCTCGGTGAGGTTACAGACCCACTCTATCCAGGTGGAAGCTTTGACCCATTGGGACTTGCTGATGATCCAGAGGCTTTCGCTGAGTTGAAGGTGAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCAATGTTTGGATTCTTTGTTCAGGCCATCGTGACCGGAAAGGGCCCATTGGAAAACCTTGCCGACCACCTTGCCGACCCAGTCAACAACAATGCTTGGGCTTATGCCACAAACTTTGTCCCCGGAAAGTGA 1194 0.5528 MAASTMALSSPSFAGKAVPLAPSATETGRISMRKTVTKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGFRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGNKVAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1689 397 SUPERFAMILY Chlorophyll a-b binding protein 265 394 - -
Prci11g1689 397 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 261 IPR001344 GO:0009765|GO:0016020
Prci11g1689 397 Gene3D Chlorophyll a/b binding protein domain 53 255 - -
Prci11g1689 397 Gene3D Chlorophyll a/b binding protein domain 257 390 - -
Prci11g1689 397 SUPERFAMILY Chlorophyll a-b binding protein 45 259 - -
Prci11g1689 397 Pfam Chlorophyll A-B binding protein 62 228 IPR022796 -
Prci11g1689 397 Pfam Chlorophyll A-B binding protein 276 363 IPR022796 -
Prci11g1689 397 FunFam Chlorophyll a-b binding protein 3A, chloroplastic 280 390 - -
Prci11g1689 397 FunFam Chlorophyll a-b binding protein, chloroplastic 53 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1689 Prci-Chr11 14209161 14217578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1689 186 397 Chloroplast and Mitochondria Gene Families AT1G29930 65.421 6.53e-84 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1689 K08912 - egr:104440810 770