LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1672	ATGGATGCGACCGTTGCTTTAATGCTTATAGAAGCTTCAATGATCGTACTGGGTTTATTAATTTCTAAAGCTATAAGATTCATCTCTCCCTCAGTTCATGACTGCGGTTGTAAAGATGCTGCCGCTTCAATTTCAACGGTTTCTTCCCCTTCTCATACTAGGGTAGCTTCTCCTGCTACCAAGTATGATGTATTCCTTAGCTTTAGAGGGGAAGACACTCGTGACAATTTCACAAGTTATCTCTATGGAGCACTTTGCAATGCAAACATTCATACTTTTATGGATCACAAACTTGACAAAGGAGATCAGATTTCACCAATTCTCTTGAGAACAATAAAGGAATCCAAGATATCTGTGATTATTTTCTCGGAAGATTATGCTTCCTCAACGTGGTGTATGGATGAGCTTATTCACATATTGGAATGTAAGGATAAATATGGAAGGATTGTAGTGCCGATTTTCTACAAGGTAGATCCATCAAATATACGGAAACAAAGTGGGAGTTTTGGAGATGGATTTGCTAAACTTGAGCAAAGATTTAAAGACAACCAAGTTAGATTGCAGAAGTGGAGGGAAGCTTTGATCCAATCAACAAGTCAGTCTGGATGGGATTCAAAGAATATCAGGCCTGAACCCAAACTTATTAAGAAGATTGTCAAAGACATCTTGGGCAAGTTGAAACATAAGTCATTGGGTCATTTTGAGGGACTAGTTGGGATTGATCATCATATTGAAAATATTGAAGAACTTTTATCCAAGGCTCGCATTGTGGGAATATGGGGCATGGCTGGTGCAGGCAAGACGACACTTGCTAAAGCTCTTTTTCAAAAGTTGAGAGCAAAATTTGAAGCTTCCTCCTTTGTTGAAAATGTAAGAGAACGAGCCAAGATTGGATTGGACAAGTTACAAAGAAAATGTGTTAAAGAATTATTGAAGGACAAAGAGATTGACACATATGACATAAAATCGTCTTTTGTGAAGAGTAGACTACAACGCAAAAAAATTCTTTTGATACTTGATGATGTGGACAACTCAATAATGGCTGAAGATTTGACAAAGGTGTGTGATTGGTTTGGGAATGGAAGTAGAATTATTATCACATCAAGAGACATGCAAGTGCTTAAAAATGCTTCTGCATCTAATGCTTATCATATTCCACCAATGAATTTCCATGATGCCTTTCATCTCTTCAGTTTGAAAGCGTTCAAGCAAAATGAGCCATTCAAAACTTATGCAAACTTATCAAAATCAGTAGTGGATTATTGTCAAGGAAATCCATTAGCCTTGGTAGTGCTGGGCTGCTTTCTTCATGGCCGAGGAAAAAAAGAGTGGGAAAGTACTCTGGAAAAATTAAAAGAAGCTCTACATGAGGACATTTTTAATGTTCTGAAATTGAGTTTTGATGGACTTGGTAGCAAACAGAGGCATGTGTTTCTTGACCTAGCATTTTTCTTGAGTGAAGCATGGAACAAGATTTCTGTAGAGGATTGCACAAGACATTTATATGGTTCTTCTGTACATATTGACATATGTGTTCTTAGAGAAAGATCCCTCATTTCAATTGATGATAAAGGTTATATTGAGATGCATGCTCTTGTGAAGGAGATGGGCCTTGAAATTTCTGCACAACAATTAATGACTAACGCTAAAAGACCAGTACGACTGTGGAGGCACGAGGATATTTATAATTTTTTCATCAATAACAAGGGGACTGAGGCAATTCAATGCATATCTTTAGATGTTAGTAAGATAAAGAGAATTACATTGAAGGCTAGTAATTTTCAAAAGATGTATAATTTAATATTTCTTAAATTGTACAAATCTGAAGAAAAGCCTTCAAAAGTGAATATTCTAGGGGATCTGGATAATCTTCCAGAAGGATTGAAATTCTTCTGTTGGGAAGAATGTCCTCTACCATCTGTGCCATTAAGCATCTGTGCGGAGAATCTTGTTCATCTTAAATTACCTAACAGTAATCTTAGACAACTTTGGGATGGAGATCAACATTTTCCAAACTTACAGTCGATTGATCTAAGAGAATCAAAACACCTGACTGGACTCCCAGATCTTTCTCAGGCCCCAAATCTTGAAAGGATAAGTGCAAGTGATTGTTCAAATTTGGGTCAAATTCATTCTTCAGTTGCCTTGGGAAAGCTTGCCAATGTATTTCTCCAATTTTGCGGTGTGCCAACGCATGTAAACATCGGTGGGACTATCAAAGGGACAAGTTCTGGGTTTGTAGCTGCCTACAACTATTTGGATCTTCGCCACTATTCATTCAATGCAGTCAAAGTGAAGCTCTTCATATCTGATGATGGCAGTATCATCTCTGGTCTTCGATTCAAGCACGTAGCAGTGCCATTCGTGAAGAAATCAAAGAGGGACAACTCTATTGGGATAATGATAGATCAAATGCACTGTACACAAAGATTGGCCTCTCTGCTTCCATTTGTGAATAAAGTTTATTGGTCAGATGGTCCGATTGATTTTGGGAATTTCAAGCAACATTTTAACCATGTGCATGCTAATGTAGCGTGCTTTCCTGCTGAGAAAAGTAAAATGGATGTGAAGAGAGTGACTGTGAGACGGAAAGCACAAGGTGGCATGGTCATGCCTTTGAGAAGAGAAGTGGCTAGTGGTAATGAAGAGAAGGAGTTAATAGGAGAGGTGCGATGTTGTAGCAACAGCAATACACTAACAGCATTGATGAGAAATCAAGTGGTTCATGATTATGAAGATCAAGAGGATGAGTTAACGGGAGAAGTGGAACTTTGCGGTGACAGGAGTGATAATAATACATTAGAAAGAGTACTGGTTCCTAAGAACATTACTCGATGGTCTTTATTGTCCAAATTGACATTGAGGAAGAGGGATATTATTGGGAATGAAGCTTGGAGGAGCGTCCCAGAACTGTCGATTCTGAAAGCACTTGCACAATCTGGTTGTTGCAGAATGTTTGAACCTATGATAGATCTGACGCTCTCTTTGGATGCTCCAGAGAGCCGTTGGTGTGCCCGTAAATTTGCCGTCTATCATTCCCCAGAATGGATTAGAGGCAAGTATGAGTTTGTATCTGGTGTGGCAATCCGTATTCTTGAGAGTAGTGTTGTTTTAGTGTTTTGGGATTATGCTATGCACTTATAA	3144	0.3855	MDATVALMLIEASMIVLGLLISKAIRFISPSVHDCGCKDAAASISTVSSPSHTRVASPATKYDVFLSFRGEDTRDNFTSYLYGALCNANIHTFMDHKLDKGDQISPILLRTIKESKISVIIFSEDYASSTWCMDELIHILECKDKYGRIVVPIFYKVDPSNIRKQSGSFGDGFAKLEQRFKDNQVRLQKWREALIQSTSQSGWDSKNIRPEPKLIKKIVKDILGKLKHKSLGHFEGLVGIDHHIENIEELLSKARIVGIWGMAGAGKTTLAKALFQKLRAKFEASSFVENVRERAKIGLDKLQRKCVKELLKDKEIDTYDIKSSFVKSRLQRKKILLILDDVDNSIMAEDLTKVCDWFGNGSRIIITSRDMQVLKNASASNAYHIPPMNFHDAFHLFSLKAFKQNEPFKTYANLSKSVVDYCQGNPLALVVLGCFLHGRGKKEWESTLEKLKEALHEDIFNVLKLSFDGLGSKQRHVFLDLAFFLSEAWNKISVEDCTRHLYGSSVHIDICVLRERSLISIDDKGYIEMHALVKEMGLEISAQQLMTNAKRPVRLWRHEDIYNFFINNKGTEAIQCISLDVSKIKRITLKASNFQKMYNLIFLKLYKSEEKPSKVNILGDLDNLPEGLKFFCWEECPLPSVPLSICAENLVHLKLPNSNLRQLWDGDQHFPNLQSIDLRESKHLTGLPDLSQAPNLERISASDCSNLGQIHSSVALGKLANVFLQFCGVPTHVNIGGTIKGTSSGFVAAYNYLDLRHYSFNAVKVKLFISDDGSIISGLRFKHVAVPFVKKSKRDNSIGIMIDQMHCTQRLASLLPFVNKVYWSDGPIDFGNFKQHFNHVHANVACFPAEKSKMDVKRVTVRRKAQGGMVMPLRREVASGNEEKELIGEVRCCSNSNTLTALMRNQVVHDYEDQEDELTGEVELCGDRSDNNTLERVLVPKNITRWSLLSKLTLRKRDIIGNEAWRSVPELSILKALAQSGCCRMFEPMIDLTLSLDAPESRWCARKFAVYHSPEWIRGKYEFVSGVAIRILESSVVLVFWDYAMHL	1047

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1672	1047	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	229	481	IPR027417	-
	Prci11g1672	1047	SUPERFAMILY	Toll/Interleukin receptor TIR domain	56	203	IPR035897	-
	Prci11g1672	1047	Gene3D	-	388	471	IPR042197	-
	Prci11g1672	1047	PRINTS	Disease resistance protein signature	256	271	-	-
	Prci11g1672	1047	PRINTS	Disease resistance protein signature	668	684	-	-
	Prci11g1672	1047	PRINTS	Disease resistance protein signature	329	343	-	-
	Prci11g1672	1047	PRINTS	Disease resistance protein signature	422	436	-	-
	Prci11g1672	1047	Gene3D	Ribonuclease Inhibitor	567	731	IPR032675	-
	Prci11g1672	1047	Gene3D	-	237	385	IPR027417	-
	Prci11g1672	1047	SUPERFAMILY	"Winged helix" DNA-binding domain	458	563	IPR036390	-
	Prci11g1672	1047	Gene3D	-	56	233	IPR035897	-
	Prci11g1672	1047	ProSiteProfiles	TIR domain profile.	60	226	IPR000157	GO:0007165
	Prci11g1672	1047	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	62	739	IPR044974	GO:0006952
	Prci11g1672	1047	Pfam	Leucine Rich Repeat	649	668	IPR011713	-
	Prci11g1672	1047	SUPERFAMILY	L domain-like	574	731	-	-
	Prci11g1672	1047	Pfam	TIR domain	61	230	IPR000157	GO:0007165
	Prci11g1672	1047	FunFam	Disease resistance protein (TIR-NBS-LRR class)	58	228	-	-
	Prci11g1672	1047	SMART	till_3	61	200	IPR000157	GO:0007165
	Prci11g1672	1047	Pfam	NB-ARC domain	242	457	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1672	Prci-Chr11	14067845	14073267	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1672	57	705	WRKY Transcription Factor Family	AT4G12020	30.804	5.73e-74	266

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1672	-		-	pcin:129286024	2103.95