Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1667 ATGGCGAAGGAAGCCACGAGGCCGCGAAAGAGGTCTCTCTCATCTCCCCCTGCTTCTGCTTCCGATGAACGCTCTACAAGAACTTCTTCTGACAGGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTTAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACTGAAAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACATGAAAATGGAAAGTGGAGAGTACGAAGAAACTGACGAGGAATCAGAGTTTGATGTAGCCATTTCCTTTGAAATAGGGGATGTTTCTACATTGCTCGAACTGCGCTTTCTCTTGGTTTGTTATCGTCGTTTTGGATTTGTGGGTTTTGCTCTGAGATTGGTTCATGCATTTCCGCTTTCACTTTTATTTCCATCTAATTGGGGAAGAGGTGATTGTCAGTTGCTTTCTCTTGCTGTCACAGTTAATAAGAATCCACATGAGGAATTCACAAGTTGGCTGGACTCGGCAAAAAGTAAGGGCATTTTCCAATCTGTTCTTTGTCAACGTGATTTAGCTCTGAATCTCTGA 618 0.4207 MAKEATRPRKRSLSSPPASASDERSTRTSSDREDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNMKMESGEYEETDEESEFDVAISFEIGDVSTLLELRFLLVCYRRFGFVGFALRLVHAFPLSLLFPSNWGRGDCQLLSLAVTVNKNPHEEFTSWLDSAKSKGIFQSVLCQRDLALNL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1667 205 SUPERFAMILY HMG-box 35 99 IPR036910 -
Prci11g1667 205 CDD HMG-box_AtHMGB1-like 33 82 - -
Prci11g1667 205 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 33 106 IPR031061 -
Prci11g1667 205 Pfam HMG (high mobility group) box 33 90 IPR009071 -
Prci11g1667 205 MobiDBLite consensus disorder prediction 1 48 - -
Prci11g1667 205 Gene3D High mobility group box domain 32 105 IPR036910 -
Prci11g1667 205 MobiDBLite consensus disorder prediction 25 48 - -
Prci11g1667 205 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 9 90 IPR009071 -
Prci11g1667 205 SMART hmgende2 24 91 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1667 Prci-Chr11 14034822 14041072 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci11g1667 HMG_box 2.7e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1667 - - pcin:129286135 393.66