Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1557 ATGTTGGATGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTTAGATTCAAAAACTTTGGAGAGCCTGGATATCCTGTGGAATTTACAGGGCCATTTCGTGACAACGTGAATGCTTTGCTTGAGTTTGCCAATTCTGAGTCTAAGTACTTAGGGTTTGGAAGAATGCCTATATGGTCTTTCCAACTTGAGGTTCATCGTCACCCTCCTTCTCATATCTTCTTGTTCGTCATCGAAGAAGCAACTGAAGCATCATCTATGAACCGCCACTGCAAGCACTGTCAATATGTAGGATGGGGAAACCATTTCATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACATTGGCTACAAGTCTGAGCTGTGAAGAAGTGCCGTGTGAAGCAATTGCTGAAGCAGGGGCTATGATGAGCAACAATAATAATGGTAAGTCAAAATTAATAGAATTACAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGGCATTTGCTCTGTGTCAATGGCCTTGAAACCGGGTCGGATCTTGCCGGACATCAGATCATGGACTTTTGGGACCGCCTCTGCACCGGGTTGCAAGCAAGGAAAGTGAGCTTGAATGATGTCTCACAGAAAAAAGGCATGGAATTGAAACTTATCAACGGAATAGCATATGGTGAGCCATGGTTTGGACGTTGGGGCTACAAATTTGGAAGAGGATGCTTTGGTGTGACTCAATCCACATACGAGAAGGCAATTGAAGCAATCAGAAGCATCCCACTTTACCTTCTGATCCACCAAATTGGCAACTCCTCTTACCATGACATACCAATCATCCTCTCAAGGTATCAAACACTCTCAGATCAAACCCTAGTCACACTTGCTGACCTGTTTCACTTCATGTTAGAGCTCAAATCTCAGCTTCCTCGCCGGGAAAACTACCCCGATTCCCATAACACCGGCTTCTCTCTCGAGGCTAATTGCCGTTGGTCCCCAAAAAGGATCGAAATGGCGACTAGGGTTATTGTTGAAGCCTTGAAAAGAGCTGAGTTCAGGTGGATTTCAAGGCAAGAGGTTAGGGATGCTGCAAGAGCGTACATTGGAGACACTGGTTTGCTAGATTTTGTGTTGAAATCTCTGGGAAACCACGTTGTTGGGAACTACATGGTTCGTAGAAGCTTGAATCCTGTCACGAAAGTTCTTGAATATTGCTTGGAAGACATCTCCAATATTGTCTTCCCCAGTCATCTTCATTATCATCATCAAGATCACGGTGGTAATAATAATAATTTGGTCATGGTGAATAACACTAACAAAAGCATAAAGGACAAGAAGTACAAAATCAGTAGGGCTCAAGTGATGAAGGACATGTTTTATTTGTACAAGTACATCCTCAAAGACCCCAAACAAACACAAGGATCAATTTTCTCAGCAATTCCACTGGCAGCGAGAATAATACTTGATACAAAGTATCTGATCAAAGAGTACTTCGGGGAGCTTCCATTTCAAGCTGATCTAGGGTTGGACGGAAAACTAAGTCTTCACTGTACAATAACGTTGAGAAACTACGACAATAATGACCCGAACAAAGTGTTAATGGCGCCACCCTACGAGTGTATCACATTGAAAAGTAGCGCCACCATTAATGACCTGAAGCTTGAAGTTGAGAGAAACTTCAGAGAGATATATTATGGATTAAGGAGTTTCTGTGTGGATTCGATAAAGAACTTGGAAAATTGTGGGGGGAATGATATGGTGTTTGGGACGGTGGAAGTGGGTGGAAAGCTAGTGGTTGAAGGATGGATAGATATTAACATTGGAGACAACATAAGTAACATCATAGGAGAGATCTGCGAAGGTAATTATGATAATAATAATGGGAAGGTTGTGGATTGTAGTTGTGGGACTAAAGAAGATGATGGAGAGAGAATGGTGTGTTGTGACATTTGTGAAAATTGGCAGCATACGAGGTGTGTTCGGATTCCGAATGATGAACAGGTTCCTTCCATATTTCTCTGCAGAAGGTGTGAACAAGAAATTGTTATGTGCCCTTCGTTGCCCTAG 2073 0.4255 MLDVEVMGNKKRKRCGRVFRFKNFGEPGYPVEFTGPFRDNVNALLEFANSESKYLGFGRMPIWSFQLEVHRHPPSHIFLFVIEEATEASSMNRHCKHCQYVGWGNHFICNKKYHFVLPSKETLATSLSCEEVPCEAIAEAGAMMSNNNNGKSKLIELQGHMMQAVFHSNGFGHLLCVNGLETGSDLAGHQIMDFWDRLCTGLQARKVSLNDVSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTQSTYEKAIEAIRSIPLYLLIHQIGNSSYHDIPIILSRYQTLSDQTLVTLADLFHFMLELKSQLPRRENYPDSHNTGFSLEANCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYMVRRSLNPVTKVLEYCLEDISNIVFPSHLHYHHQDHGGNNNNLVMVNNTNKSIKDKKYKISRAQVMKDMFYLYKYILKDPKQTQGSIFSAIPLAARIILDTKYLIKEYFGELPFQADLGLDGKLSLHCTITLRNYDNNDPNKVLMAPPYECITLKSSATINDLKLEVERNFREIYYGLRSFCVDSIKNLENCGGNDMVFGTVEVGGKLVVEGWIDINIGDNISNIIGEICEGNYDNNNGKVVDCSCGTKEDDGERMVCCDICENWQHTRCVRIPNDEQVPSIFLCRRCEQEIVMCPSLP 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1557 690 ProSitePatterns Zinc finger PHD-type signature. 635 679 IPR019786 -
Prci11g1557 690 CDD PHD_MMD1_like 634 679 - -
Prci11g1557 690 Pfam PHD-finger 635 681 IPR019787 -
Prci11g1557 690 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 684 - -
Prci11g1557 690 SUPERFAMILY FYVE/PHD zinc finger 626 682 IPR011011 -
Prci11g1557 690 ProSiteProfiles Zinc finger PHD-type profile. 632 682 IPR019787 -
Prci11g1557 690 SMART PHD_3 634 680 IPR001965 -
Prci11g1557 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 684 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1557 Prci-Chr11 13252937 13256050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1557 10 690 PHD Transcription Factor Family AT5G22260 53.295 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci11g1557 PHD 6.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1557 K26271 - gmx:100780210 961.059