Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1550 ATGGGGCGTTCTCGTGGGAATTTCCACGCTGATGAGGACCCCAATCAAAGGTCAAGGAGAAAAAAGAATGCTGCTAGTGGAGATATTTCAGAACCTGGAGCTGCAGGTCAAGGAACAAGTGAAGGAAAAAAGGCTTGGTACCATTGCAATTACTGTAACAAAGATCTTACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCTGATTTTGACCTATGTATAGAGTGTTTTTCCGTGGGAGCTGAGGTGACACCTCATAAAAGCAATCACCATTACAGGGTTATGGACAATTTATCCTTCCCTCTCATTTGCGCAGATTGGAATGCAGATGATGAAATTCTGCTTCTGGAGGGAATTGAAATGTATGGCTGGGGGAACTGGGCAGACGTTGCTGAGCATGTTGGGACTAAGAATAAAGAAGCATGCATAGAACACTATTGGAATGTTTACTTGAACTCCAAAACCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGAAAAAACAGAAAGGAGCTACTTGCTATGGCTAAAGGTCAAGGCGATGACAAGAAAGGGATTCCCATGGGGGATCTTGGTATAAAGGAAGAATCTCAATTTTCTCCAGCTAGAGTCAAGGTTGAAGATTCTCATAAAGCTGGTACTTCTAGCCGTTTACAGTCCAACTTAAATTCAGAATCGGAGTCTGGACCCTCTAGTGGCTCACATACTGCGCCAGCTGCTAATCAGAGGGCATCTAATGTGGGACGTGGAAAAGACAGTCCTGGAGTTATTAAAATGGAAGGTATATCCTCAACTAGAAAAATATTCTGGAGGAAAAAACCAAGTTCCTCTGGAAATAAAGGTCCTTCTTTAGTAGAGTTAAGTGGTTATAACCCCAAAAGACGGGAATTTGATCCAGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAATTTAAGGACGGTGAACCAGATGATGATCGGGAACTAAAGCTGCGCATTCTGCGTATATATTCGAAAAGGCTTGATGAAAGAAAGCGTAGAAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAGTCCTTTTGAGAAGGATTTAACACCTGAAGAGAGGACAATATGCCGAAAATATGATGTATTCATGCGCTTTCATACCAAGGAAGATCATGAGGAATTGCTTAGGGTAGTAATCTCTGAGCACAGAACCCGTAGAAGAATTGAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCACATCTGCCGAAGCAGATAGATATCTTGAACAGAAGAGAAGAAGAGAGGCAGAGGAAGGTTCTCATGGGTCAAAAGAAAGAGCTCAAGCTGGTCCAAACAATCATGGGGTTCCAAATGCATTCATGTCTCCAGACTCTGCTGGTAAGGATTCAAGTGCAAGACCAGCAGGGCCCGCTGGTTCAAGCTCTGTCAATGAAATGGATGTGACAGGATACTATGGGGCTGATCTACTTTCTGTACCTGAAAAACGTTTATGCTGTGAACATAGGTTGCCTCCAGCCATCTTCCTGAAGATGCAAGAGATTCTGTCGGTAGAAATACTGAGTGGCAATGTCACAGCCAAATCTGATGCCCACCACTTGTTCAACATGGATAGCAGCAAGATTGATTGCGTGTACGATATTCTCGTGAAGAAGGGGATTGCTATGCCCTGA 1677 0.4323 MGRSRGNFHADEDPNQRSRRKKNAASGDISEPGAAGQGTSEGKKAWYHCNYCNKDLTGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHHYRVMDNLSFPLICADWNADDEILLLEGIEMYGWGNWADVAEHVGTKNKEACIEHYWNVYLNSKTFPLPDMSHVVGKNRKELLAMAKGQGDDKKGIPMGDLGIKEESQFSPARVKVEDSHKAGTSSRLQSNLNSESESGPSSGSHTAPAANQRASNVGRGKDSPGVIKMEGISSTRKIFWRKKPSSSGNKGPSLVELSGYNPKRREFDPEYDNDAEQLLAEMEFKDGEPDDDRELKLRILRIYSKRLDERKRRKDFILERNLLYPSPFEKDLTPEERTICRKYDVFMRFHTKEDHEELLRVVISEHRTRRRIEELKEARAAGCRTSAEADRYLEQKRRREAEEGSHGSKERAQAGPNNHGVPNAFMSPDSAGKDSSARPAGPAGSSSVNEMDVTGYYGADLLSVPEKRLCCEHRLPPAIFLKMQEILSVEILSGNVTAKSDAHHLFNMDSSKIDCVYDILVKKGIAMP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1550 558 FunFam Transcriptional adapter 40 95 - -
Prci11g1550 558 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Prci11g1550 558 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Prci11g1550 558 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Prci11g1550 558 ProSiteProfiles SWIRM domain profile. 472 558 IPR007526 GO:0005515
Prci11g1550 558 PIRSF Txn_adaptor_ADA2 34 557 IPR016827 GO:0003713|GO:0006357|GO:0035065
Prci11g1550 558 SUPERFAMILY Homeodomain-like 465 555 IPR009057 -
Prci11g1550 558 FunFam Transcriptional adapter 2 473 557 - -
Prci11g1550 558 SMART sant 103 152 IPR001005 -
Prci11g1550 558 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Prci11g1550 558 MobiDBLite consensus disorder prediction 419 439 - -
Prci11g1550 558 MobiDBLite consensus disorder prediction 269 284 - -
Prci11g1550 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 155 IPR017930 -
Prci11g1550 558 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 553 - -
Prci11g1550 558 MobiDBLite consensus disorder prediction 213 248 - -
Prci11g1550 558 FunFam Transcriptional adapter 2 100 152 - -
Prci11g1550 558 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Prci11g1550 558 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Prci11g1550 558 Gene3D - 101 152 - -
Prci11g1550 558 MobiDBLite consensus disorder prediction 1 41 - -
Prci11g1550 558 SMART zz_5 43 88 IPR000433 GO:0008270
Prci11g1550 558 SUPERFAMILY RING/U-box 45 109 - -
Prci11g1550 558 MobiDBLite consensus disorder prediction 419 479 - -
Prci11g1550 558 MobiDBLite consensus disorder prediction 1 26 - -
Prci11g1550 558 Gene3D - 38 96 IPR043145 -
Prci11g1550 558 Gene3D - 473 556 IPR036388 -
Prci11g1550 558 Pfam Zinc finger, ZZ type 46 87 IPR000433 GO:0008270
Prci11g1550 558 CDD SANT 107 149 IPR001005 -
Prci11g1550 558 MobiDBLite consensus disorder prediction 197 298 - -
Prci11g1550 558 CDD ZZ_ADA2 47 95 IPR041983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1550 Prci-Chr11 13202794 13208860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1550 1 555 EF-hand Containing Proteins AT3G07740 45.876 9.79e-153 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci11g1550 Myb_DNA-binding 6.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1550 K11314 - gmx:100811887 895.19