Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1541 ATGGGAATGGACACTGGCAAGCTCTTCATTGGTGGAATTTCATGGGATACAAATGAAGAACGACTCAGACAGTACTTCCAGAATTTTGGAGATGTGGTGGAAGCAATGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTTTCTGATCCTTATGTTGCTGAAAAAGTTGTCATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCCATCCCACGGGATGATCAGAACATTTCTAACAGAAGCAACGGCAGCATTCATGGATCACCCGGTCCAACCCGCACAAAGAAGATATTTGTTGGAGGCCTTGCATCCACAGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGATCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAAGTTCTGTATAAAACATTTCATGAACTTAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCCCCGGGGCCAAGTAGAGGCCAATTAGCTGGATATAGCTATGGTTTAAGTAGAGTTAGTGGATTTTCTAATGGTTTCATTCAGGGATATAGTCCTAGCTTGGTTGGAGGGCATGGGCTTAGAGCTGATGGCAGATTTAGTCCTGTTACTGTTGGCCGAAACGGATATCCTCCATTAAGTCCCAGTTATGGGACAGGATTGAATTTTGAACCAGCATTTAGTCAAAATGGAAATTCAAACTTGAGTTCTTCCCTTATGTTAGGACGAGCTCTGAATCCTTCATACAACGGAAATTCAAGCAGGTACCATAATGTCATGGGGTATAATGGTACAGGTGTAGGAAACAATTCAGCGAATAAGAATCTTTGGGGGAATGAAAATATTAGCTTTGCTAATAATCCTGCAAATTCTGATGGTTTTCATGGGTATGGAAGTCAAAATGCTGGCATGGGTTCTTTTGGTAATATTGGAACACTGTGGAGTTCCTCCCCTAGTGCAGATCAAGCTGGAACTGTTATTGGCTCTGGCTATGGTAAGGGCACTCTTAACTATGGTTCTGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATATGGAAAACGTAGTGAAGCCATTGCTGAATCAGTGTCATCATATGCTCTATCCAATGGCAATTATGACGGGGCATACAAAGACATTTATGAAGCTGGGTCATTTTTTGGTGACTACACCTGGAGATCGTCACCTTCAGAACTGGAAGATACTGATGCTCTTGGTTATGATCTTGGAAATGCTGTTTCAGATTTGATAAGCAAAAGCTCTGGTGGCCACATTGGGGCATATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCATAG 1422 0.4156 MGMDTGKLFIGGISWDTNEERLRQYFQNFGDVVEAMIMKDRTTGRARGFGFIVFSDPYVAEKVVMEKHVIDGRTVEAKKAIPRDDQNISNRSNGSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYSYGLSRVSGFSNGFIQGYSPSLVGGHGLRADGRFSPVTVGRNGYPPLSPSYGTGLNFEPAFSQNGNSNLSSSLMLGRALNPSYNGNSSRYHNVMGYNGTGVGNNSANKNLWGNENISFANNPANSDGFHGYGSQNAGMGSFGNIGTLWSSSPSADQAGTVIGSGYGKGTLNYGSGDVNFRPKAVGYGKRSEAIAESVSSYALSNGNYDGAYKDIYEAGSFFGDYTWRSSPSELEDTDALGYDLGNAVSDLISKSSGGHIGAYAVANRQSNRGIAA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1541 473 MobiDBLite consensus disorder prediction 81 102 - -
Prci11g1541 473 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Prci11g1541 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Prci11g1541 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci11g1541 473 SMART rrm1_1 107 179 IPR000504 GO:0003723
Prci11g1541 473 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Prci11g1541 473 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Prci11g1541 473 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Prci11g1541 473 Gene3D - 4 88 IPR012677 -
Prci11g1541 473 Gene3D - 103 189 IPR012677 -
Prci11g1541 473 MobiDBLite consensus disorder prediction 86 100 - -
Prci11g1541 473 CDD RRM2_Hrp1p 107 184 - -
Prci11g1541 473 SUPERFAMILY RNA-binding domain, RBD 102 203 IPR035979 GO:0003676
Prci11g1541 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Prci11g1541 473 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 469 - -
Prci11g1541 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Prci11g1541 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1541 Prci-Chr11 13055713 13059775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1541 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 2.01e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1541 K14411 - cave:132171089 666.381