Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1539 ATGGTTTCTCTGGAGGATTCTCACTCCAATTCCAATCGTTTCCCTTTGACCCGAAGCTATTACTCTACTACTACTTCCGTCAACAATTCTTCGTCCAGAATCCAGCGACACACTGGAAGGTCTATGCGAACTATACGCTCTAATTTCTTCCAGGATGACCATAGCTGCTCCTTCACCACGGCCACCGAGAAATCCACTTGCCTGTCGGAAAACATGACCGATTCGGTCATAGACCTGAGGCTTGGCGAGCTTGCATCGAAGAACAACAAATCTGCCAAGTCTTCTGCTACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTAGCAGCGATATTTCCGGGGAGCTGCAGAGGCTGGCGAGTTTACCGTCTCCGGAAAATGTGTTGAAGAGCGATGCCAGTCGTGAAGCAGAGAAGGAGCCGGAGCCGGAGCCGTGCCTGGGGTTTCTGCAGAGAGAGAATTTCTCTACCGAGATCATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGTATCGATGGGCTACAGTCACAGTCGGTTGCTGTGAAGCGATCTGCTGCGGCTAAGCTCAGGCTGCTGGCGAAGAATCGAGCGGATAATCGAGCTCTGATCGGTGAGTCTGGTGCGGTTCCCACTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGCTGAATCTCTCGCTGCACGAAGATAACAAGATTCTGATTACCAATGCAGGAGCTATAAAGTCACTGATTTATGTGCTCAAAACCGGAACAGAGACTTCGAAGCAGAACGCGGCATGTGCGCTTCTGAGCCTTGCGTTAGTTGAAGAAAACAAGAGCTCTATCGGGGCTAGTGGGGCAATACCACCGCTTGTTTCCTTGCTATTGAGTGGTTCGAGCAGGGGAAAGAAGGACGCTCTGACGACTCTCTACAAGCTCTGCTCTATAAGGCCAAATAAGGAGAGGGCAGTGAGCGCCGGAGCAGTGAAGCCGCTTGTGGAGATGGTGGCAGAGCAAGGAACGGGTATGTCTGAGAAGGCAATGGTGATACTTAATAGCTTGGCCGCGATTCCGGAAGGGAAGGAAGCAATTGTTGATGAAGGCGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGGAAGGAATTTGCTGTTTTGACACTTTTACAGCTATGTGCTGACAGTGTGAGGAATAGAGGATTGCTTGTGAGGGAGGGTGGAATACCCCCTCTGGTTGCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCACAAGGCAGAAACGCTCCTTGCATATTTGAGAGAATCAAGACAAGAAGCATCCACTTCAAGTCCTTAG 1392 0.5072 MVSLEDSHSNSNRFPLTRSYYSTTTSVNNSSSRIQRHTGRSMRTIRSNFFQDDHSCSFTTATEKSTCLSENMTDSVIDLRLGELASKNNKSAKSSATEEELLDLSQAFSDFSACSSDISGELQRLASLPSPENVLKSDASREAEKEPEPEPCLGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPTLVPLLRCSDPWTQEHAVTALLNLSLHEDNKILITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTLYKLCSIRPNKERAVSAGAVKPLVEMVAEQGTGMSEKAMVILNSLAAIPEGKEAIVDEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVALSQTGSVKAKHKAETLLAYLRESRQEASTSSP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1539 463 MobiDBLite consensus disorder prediction 129 151 - -
Prci11g1539 463 Gene3D - 159 316 IPR011989 -
Prci11g1539 463 Gene3D - 317 460 IPR011989 -
Prci11g1539 463 SUPERFAMILY ARM repeat 174 452 IPR016024 -
Prci11g1539 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Prci11g1539 463 SMART arm_5 413 453 IPR000225 GO:0005515
Prci11g1539 463 SMART arm_5 207 247 IPR000225 GO:0005515
Prci11g1539 463 SMART arm_5 248 288 IPR000225 GO:0005515
Prci11g1539 463 SMART arm_5 371 411 IPR000225 GO:0005515
Prci11g1539 463 SMART arm_5 289 329 IPR000225 GO:0005515
Prci11g1539 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Prci11g1539 463 MobiDBLite consensus disorder prediction 137 151 - -
Prci11g1539 463 FunFam U-box domain-containing protein 4 164 316 - -
Prci11g1539 463 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Prci11g1539 463 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Prci11g1539 463 PANTHER U BOX DOMAIN-CONTAINING 132 451 - -
Prci11g1539 463 FunFam U-box domain-containing protein 4 317 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1539 Prci-Chr11 13048859 13051994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1539 155 456 U-box Gene Family AT2G23140 47.419 2.07e-82 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1539 - - qsa:O6P43_031331 706.442