Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1470 ATGGCTTTTGTGGGAGAGAACAGTGGTGGTGGTGATGGTCTAGTATGTCCTCAAATGATGATGAATATGCCTTTAGTGACAAATCATCATCATCATCATCAAAGTGGTCATCATCATTCATTAATAAATCCTAATGCTAATGCACATACTAATTTAAACACTATTAATTCTCCTTTTCTCCCCACACCTTGCACTAATAACAGTAGTTTCTCCTCCCCCTCCCCCTCCCTTGTTACGCTTCAAAACATCAGCAACACTGGGTTAAGCTTTGGCCGTTATTTCATGGACATCGTCGACTACAACATTAACAACAACGATGGTAGTTCCTCTTGTTCTTCTGTGAAAGCCAAGATCATGGCTCACCCCCACTACCCTCGCCTCCTTGCTGCTTACGTCAATTGTCAAAAGGTGGGCGCACCGCGGGAAACGGTGGCGAGGCTCGATGAAGCATATGCGGCGGCGGCGGCAATGGGCGGCAACGGAGCTGGGTCGGGCTGCACCGGAGAAGATCCGGCGCTGGATCAGTTCATGGAGGCGTACTGTGAGATGCTGACAAAGTACGAGCAAGAGCTTTCCAAACTTCAGGAGGCCATGTTCTTCCTTCAGAACATCGAGTGTCAATTCAAAGCTCTTACCGTTGATTCTCCGATTAACTTTGCTTGTGATAAGAATATTGAAAGGACTGAATCATCTGAAGATGACATGGATCTTCAAAACAGCAGAAGCTTGATCGATCCGCAGGTTGAGGATAAGGAATTGAAAGATCAGCTTCTGCGAAAGTACAGCGGATACTTGGGAAGCCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAGGGAAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAACAGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAAAGAAAGCGTCACTGGAAGCCTTCAGAAGACATGCAATTCGTGGTTGTGGATCCAATGCATCCTCCCTACTTCATGGACGACGTTCTGGGAACTCCATATCCCATGGATTTCTCTCACGCCATGCTCTGA 1113 0.4609 MAFVGENSGGGDGLVCPQMMMNMPLVTNHHHHHQSGHHHSLINPNANAHTNLNTINSPFLPTPCTNNSSFSSPSPSLVTLQNISNTGLSFGRYFMDIVDYNINNNDGSSSCSSVKAKIMAHPHYPRLLAAYVNCQKVGAPRETVARLDEAYAAAAAMGGNGAGSGCTGEDPALDQFMEAYCEMLTKYEQELSKPXQEAMFFLQNIECQFKALTVDSPINFACDKNIERTESSEDDMDLQNSRSLIDPQVEDKELKDQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPMHPPYFMDDVLGTPYPMDFSHAML 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1470 371 Pfam KNOX1 domain 114 151 IPR005540 GO:0003677|GO:0005634
Prci11g1470 371 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Prci11g1470 371 SUPERFAMILY Homeodomain-like 275 351 IPR009057 -
Prci11g1470 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Prci11g1470 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Prci11g1470 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Prci11g1470 371 Gene3D - 271 342 - -
Prci11g1470 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Prci11g1470 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Prci11g1470 371 Pfam KNOX2 domain 167 213 IPR005541 GO:0003677|GO:0005634
Prci11g1470 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Prci11g1470 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Prci11g1470 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Prci11g1470 371 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Prci11g1470 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 342 - -
Prci11g1470 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1470 Prci-Chr11 12441624 12447649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1470 96 371 Homeobox Transcription Factor Family AT1G62360 71.831 3.73e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci11g1470 KNOX2 5.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1470 - - gmx:100805837 455.292