Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1460 ATGGAGGTGTTTTGCTCTAACGCATTTGAAGTTTCAAGGAGGAGAAAGGTTCAAGAGAGTCATAAGTATCCTCCGATATCGGAAGAGGAAGGAGACATTCTATGTTGTTCAAAGAGGAGGTTTAATATTCAATGCAAGAGAGGTGATCAACCAAAGAAATCTATAGCTGCCTCAAAAAGGAAAAGAAATTTGCAAAATGATTTTTTGATTGATGATTTGGAAGATGACAAGGAAACCGTGGTTGCCAAGATACGGTCCAGGGGAAGAGCTCATAAAATGGACTCTGTGACTATGATGGATACAATAGGCTCAGAATCAAGTGGAGAGAGTCCATCTTCAAGCATTACCACATTGCATTCTCCACCAGCATCCACATTGCCTCCTTCGGATTTAGGTAACCATACTGAGGACAATCACATTGCAACAAGTAGGAGGGATACTAAACGAAATTGCTGGATATGTCATCAGTGCATGAGAAGGGATAGATTAAGCTATGTCCCTTGCACCAAATGCGAACAAAAATTATACTGTGACAAGTGCATCAAGCAATGGTATCCTGATATGACGGTAGCAGAAATTGCAGAGCGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGTCTGCTTGCGCTCAAGTGGGATGATCAAGACATCTATCAGGGATATCTCTGATAATGAGAAGTTTCAATATCTGCAATATTGTATCAACTTGGTTCGTCCATTTCTGAAACAAATGTGTGAAGAACAAGCTCTAGAGGAAGAGATTGAAGCTAGAATACAAGGAACATCACGTTCTGAGATTAGGATACTGCAAACTCTATGCAGTGATGATGAACGTGTCTATTGCAACCATTGTGCTACTTCAATTGTTGATCTTCATCGAAGCTGCCCTGTGTGTTCCTATGAACTCTGCCTCCAGTGTTGCCGAGAAGTTCGTAATGGGACTATTTCGCACCGAGCTGAAATGAGGTTTCAGTATGTGAATAAGGGCTATGATTATATGCATGGTGGTGATCCTTCGCCAGAGTCTTGTGATTCCAAGACTTCAGATGATCCTTGTGTTGAGCTATCTATTGAGTGGACTGCAGAAAGCAATGGAAGTGTTTTTTGTGCCCCAAAGGAGTTTGGGGGATGTGGAAACGGCAAGTTGGAGCTCAAGCATATTCTTCCCAGGGGTTGGATATATGACCTGGAAGCTAAAGCTGGTGATTTGTTAAGAAACTACGTTACTGAACAAACTCCTCTGAAGCACATAGGAGTAGCAGTATCATGCTACAACCGCTCTGTGAGAAGAGCTGCTTCTAGAGAAGGCAGTGATGACAATGACATATACTGCCCTTCTTCAATGGAGATTATAAACGATGGGTTATCAATCTTCCAAAAGCATTGGATTAATGGTGAACCTGTTATCGTTCGTGATGTTCTTCAACAAGCAACAGGTTTGAGCTGGGAGCCCATGGTTATTTGGAGGGCAGTATGTGCAGCTTCAGGTTCAAAAATCAACCCAAAAGTGTCAGAAGTTAAGACGATTGATTGTCTTGCTGGCTGTGAGGTAGAAATCAGCACTCATAAGTTCTTTAAAGGTTATATGGAAGGAAGAACATATAGAAACCTCTGGCCAGAGATGCTTAAGCTAAAAGACTGGCCTCCCTCTGATAAGTTTGAAGATCTTTTGCCTCGCCACTGTGATGAATTTATCCGTTCCTTGCCATTCCAAGAGTACACTGATCCTCGGGTCGGAATGCTCAATCTTGCTGTCAAGTTGCCAATGCATGTCCTGAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGAATAAAAGAAGAGCTTGGCAGAGGAGATTCTGTAACAAAGCTTCATTGTGACATGTCAGATGCGTGTTCACAGGTGAATATTTTGACCCATACAGCAGAAGTAAAGTTAAACGATGAGCAATGCTTGTCTATTTTGAAGTTGAAGAAGGCACACAAGGTCCAAGATGAGAAAGAGAAGTGCTGTGGTGAAATCAATGGAAATATCTCTCCAAATGATGTGGCTGAAGGGGTCGCATTTGTCACTACAGAAAATGAGACAAGAGAACCAGGTGCTGCTCTTTGGGACATTTTCAGAAGAGAAGATACTAAGAAGTTAGAAACATATTTGAGAAAACACTCAAGAGAGTTCAGACATACTTATTGTTCTCCAGTTAAACAGGTTTTCCATCCCATTCATGACCAATGTTTTTATTTAACAATGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTGTTGAACCTTGGACGTTTGAGCAGAAACTAGGGGAGGCTGTGTTTATTCCTGCTGGATGCCCTCACCAAGTTAGAAATCTCATGTCATGCACCAAAGTTGCTGTGGACTTTGTGTCCCCAGAAAACCTCCGTGAGTGTCTGGCTTTAACTAATCAGTTCCGGCTGCTTCCCAAGAACCACAGGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTGTATGCTGCTGACCAAATTCTCAAAGATTTGGAATCCTTACTCAAGCGTTCTTGA 2550 0.4192 MEVFCSNAFEVSRRRKVQESHKYPPISEEEGDILCCSKRRFNIQCKRGDQPKKSIAASKRKRNLQNDFLIDDLEDDKETVVAKIRSRGRAHKMDSVTMMDTIGSESSGESPSSSITTLHSPPASTLPPSDLGNHTEDNHIATSRRDTKRNCWICHQCMRRDRLSYVPCTKCEQKLYCDKCIKQWYPDMTVAEIAERCPFCRKNCNCNVCLRSSGMIKTSIRDISDNEKFQYLQYCINLVRPFLKQMCEEQALEEEIEARIQGTSRSEIRILQTLCSDDERVYCNHCATSIVDLHRSCPVCSYELCLQCCREVRNGTISHRAEMRFQYVNKGYDYMHGGDPSPESCDSKTSDDPCVELSIEWTAESNGSVFCAPKEFGGCGNGKLELKHILPRGWIYDLEAKAGDLLRNYVTEQTPLKHIGVAVSCYNRSVRRAASREGSDDNDIYCPSSMEIINDGLSIFQKHWINGEPVIVRDVLQQATGLSWEPMVIWRAVCAASGSKINPKVSEVKTIDCLAGCEVEISTHKFFKGYMEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRVGMLNLAVKLPMHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDACSQVNILTHTAEVKLNDEQCLSILKLKKAHKVQDEKEKCCGEINGNISPNDVAEGVAFVTTENETREPGAALWDIFRREDTKKLETYLRKHSREFRHTYCSPVKQVFHPIHDQCFYLTMEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLMSCTKVAVDFVSPENLRECLALTNQFRLLPKNHRAREDKLEIKKMIVYAADQILKDLESLLKRS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1460 849 SUPERFAMILY Clavaminate synthase-like 458 834 - -
Prci11g1460 849 ProSiteProfiles JmjC domain profile. 578 812 IPR003347 -
Prci11g1460 849 MobiDBLite consensus disorder prediction 101 141 - -
Prci11g1460 849 FunFam Transcription factor jumonji domain-containing protein 441 821 - -
Prci11g1460 849 Coils Coil 839 849 - -
Prci11g1460 849 ProSiteProfiles Zinc finger RING-type profile. 151 201 IPR001841 -
Prci11g1460 849 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 66 847 IPR045109 GO:0032454|GO:0033169
Prci11g1460 849 MobiDBLite consensus disorder prediction 101 136 - -
Prci11g1460 849 CDD cupin_RmlC-like 735 784 - -
Prci11g1460 849 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 148 220 IPR018866 -
Prci11g1460 849 Gene3D Cupin 445 821 - -
Prci11g1460 849 SMART cupin_9 559 812 IPR003347 -
Prci11g1460 849 Pfam JmjC domain, hydroxylase 697 795 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1460 Prci-Chr11 12373366 12381853 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci11g1460 JmjC 6.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1460 K15601 - gmx:100797860 1029.62