Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1446 ATGGCCACGTTAACCCCAAAAATCTTGTTCCTTTCATGCTTTCTTCTTCAAAACTTGACTACAACCTTAAGTGCAGATTCAACAGACAATTATTACCTCAATACTACGAAGCTCAGTTCAAGCTATATCCCCAAACCTAAGAACCTTATCCTCAACACCATTGACTCTTGCTGGAGAGGCAAATCAAACTGGGCATCGAATCGGAAAGCCCTGGCTGATTGCGCTGTTGGGTTCGGCAAAGACGCCACTGGAGGTAAGTTTGGAGCTATATATGAAGTCACTGATGCATCCGATGACCCTGTGAACCCTAAACCGGGGACACTTCGCTATGGTGTCATCCAAACACGGCCTCTTTGGATAATATTCGCCAGGGATATGGTTGTGACCTTCAAGAACGAGCTTATAGTCAATAGCTATAAGACCATCGATGGCAGAGGATCCAAAGTGGAGATTGCTTATGGACCTTGCATCACCATCCAAGGTGTTAGCCATGTCATTATACATGGGATTAGCATTCATGATTGTAAACCAGGAAAAGCTGGGATGGTTAGGAATAGTGAAGAGCATGTGGGGCAAAGGGGAGGTTCAGATGGAGACGGCATTAGCATATTTGCTTCTTCGCATGTTTGGATCGATCATTGCTTCTTGGCTCGTTGTACAGATGGCCTTATTGATCTTATCCATGCCTCAACTTCTGTCACCATCTCTAACAATTACTTCACTCAGCATGACAAAGTAATGCTGCTCGGGCACAGCGATGAATATACAGCAGATAGAATAATGAAAGTGACAGTAGCCTTCAATCGTTTTGCCAACGGCCTCGTAGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTGGCGAACAACCAATATGAGGAGTGGATTCAGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGGCAACTACTTCATAGCTCCAAACAACGCTACTGCAAAACAGGTTACCAAGAGGGAAACAAGTGATAAAAGCTGGAACAAGTGGAAGTGGAGGACGTACAAGGATGAATTCAGGAATGGAGCATATTTTGTTCCATCAGGGTTTGGAAGTTGTGCTCCTTATTATGCAGCTTCACAGTCTTTCATAGCTGTTACTGCCTCCTTGGTCCCTCATTTGACTCTCAATGCTGGTCCTCTTCATTGTGTCCTTGGCAAGGCTTGCTCCTAA 1203 0.4514 MATLTPKILFLSCFLLQNLTTTLSADSTDNYYLNTTKLSSSYIPKPKNLILNTIDSCWRGKSNWASNRKALADCAVGFGKDATGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTRPLWIIFARDMVVTFKNELIVNSYKTIDGRGSKVEIAYGPCITIQGVSHVIIHGISIHDCKPGKAGMVRNSEEHVGQRGGSDGDGISIFASSHVWIDHCFLARCTDGLIDLIHASTSVTISNNYFTQHDKVMLLGHSDEYTADRIMKVTVAFNRFANGLVERMPRVRFGYAHVANNQYEEWIQYAIGGSADPTILSEGNYFIAPNNATAKQVTKRETSDKSWNKWKWRTYKDEFRNGAYFVPSGFGSCAPYYAASQSFIAVTASLVPHLTLNAGPLHCVLGKACS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 370 393 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Prci11g1446 400 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Prci11g1446 400 PANTHER PECTATE LYASE 18-RELATED 42 397 IPR045032 GO:0030570
Prci11g1446 400 Pfam Pectate lyase 132 316 IPR002022 -
Prci11g1446 400 Gene3D - 51 392 IPR012334 -
Prci11g1446 400 SMART amb_all 125 322 IPR002022 -
Prci11g1446 400 SUPERFAMILY Pectin lyase-like 52 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1446 Prci-Chr11 12299896 12301797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1446 43 399 Polysaccharide Lyase AT1G11920 70.588 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1446 K01728 - gmx:100803229 615.15