Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1445 ATGCCTCAAACCCTCGAGCATGGCTACCTTAACACCCCCACTCTTCTTCTTCCTTTCAACATTATCGTTCCTACCACTATTACATCTTCAAGCTCTTATGCCAACAGTACTGCTCCCAAAACACCAAAGAACCCCATCCTCAACACCATAGACTCTTGCTGGAGAACCAACTCAAACTGGGCATCGAATCGCCAAGCCTTAGCTGATTGTGCTGTCGGGTTTGGCAAAGACGCTATTGGAGGTAAGTTTGGAGCTATATATGAAGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGCTATGGTGTCATCCAAACACGGCCTCTCTGGATAATATTCGCCAGGGACATGGTTATTACCCTCAAGAACGAGCTCATAGTGAATAGCTACAAGACCATTGATGGCAGAGGAGCTGAGGTGGAGATTGCTTATGGACCTTGCATTACCATTCAAGGTGTTGATCACGTCATTATACACGGGATTAGCATCCACGATTGCAAACCAGGAAAATCTGGGATGGTCAGAAGGAGTAGTGATCATGTAGGACGTCGTTTAGGTTCAGATGGAGACGCTATCAGCATATTTGGGTCCTCAAATGTTTGGGTTGACCATTGCTTCCTTGCTCGTTGTGCCGATGGTCTCATTGATATTATTCACGCCTCCACTTCCATCACCATTTCTAACAATTACTTCACACAGCACGATAAAGTGATGCTGCTAGGACACAGCGATCAATACAAGGAAGATAAGATAATGAAAGTGACAATAGCTGTCAACCATTTTGCCAGTGACCTATATGAAAGGATGCCAAGGATAAGATTTGGATACGCCCATGTGGTCAACAACAGATATGATGGGTGGAAGATGTATGCCATTGGTGGCAGTGCTGACCCAACCATTCTGAGTGAAGGGAACTACTATATTGCTCCGAGTAACCCCAACGGAAAGCAGGTTACCAAGAGGGTAGTGAAGAAAGACTGGAAGAATTGGAAATGGAGGACTTATAAGGACTCATTTCTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTGCTCAATCTTTTATTGCTGCTTCAGCATCCTTGGTGCATGCATTAACCCTTAATGCTGGTCCTTTGAGTTGTAGTGTTGGGAAAGCTTGTTAA 1185 0.4506 MPQTLEHGYLNTPTLLLPFNIIVPTTITSSSSYANSTAPKTPKNPILNTIDSCWRTNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTRPLWIIFARDMVITLKNELIVNSYKTIDGRGAEVEIAYGPCITIQGVDHVIIHGISIHDCKPGKSGMVRRSSDHVGRRLGSDGDAISIFGSSNVWVDHCFLARCADGLIDIIHASTSITISNNYFTQHDKVMLLGHSDQYKEDKIMKVTIAVNHFASDLYERMPRIRFGYAHVVNNRYDGWKMYAIGGSADPTILSEGNYYIAPSNPNGKQVTKRVVKKDWKNWKWRTYKDSFLNGAYFVPSGYGSCAPYYSSAQSFIAASASLVHALTLNAGPLSCSVGKAC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1445 394 Gene3D - 47 387 IPR012334 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 129 145 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 193 214 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 93 118 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Prci11g1445 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Prci11g1445 394 SMART amb_all 121 318 IPR002022 -
Prci11g1445 394 Pfam Pectate lyase 128 312 IPR002022 -
Prci11g1445 394 SUPERFAMILY Pectin lyase-like 48 385 IPR011050 -
Prci11g1445 394 PANTHER PECTATE LYASE 18-RELATED 44 392 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1445 Prci-Chr11 12277898 12279918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1445 30 394 Polysaccharide Lyase AT1G11920 70.027 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1445 K01728 - gmx:100807483 589.726