Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1399 ATGATGCACCCTGGTCCTGGCATGGCTCCCCCAACCATGGGCCAACAGCCTCCCCAGCAGCAGTATCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCGATGTGGCCTCCCTCAGTTCAACCACCGCCACAGTCGGTCGCTCCACCGCAAACGACCCAAGCCGTCCAGCCCACAACCGCCGATGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACACTTGCTTTGCTCATACAGGCGAGGTGGCCTCGGTGAAAGTTATTCGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGCGCAGCCGCTGAGAGAATACTTCAAACATTTAACGGAACCATTATGCCAAATGGTGGGCAAACCTTCAGATTGAACTGGGCAACTTTTAGTTCGGGTGAGAGGCGGCATGATGATACTCCAGATTACACGATATTCGTTGGAGATTTAGCTTCAGATGTTACCGATTACATGCTGCAGGAGACATTTAGGGCTAGGTATCCCTCAATTAAAGGTGCAAAAGTTGTGATCGATCGACTCACTGGGAGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAAAGTGAACAAATGCGAGCTATGACTGAGATGCAAGGTGTTTTATGTTCGACAAGACCCATGCGGATTGGACCAGCCACCAACAAAAACCCTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCGAATAATACAACTATTTTTGTTGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGGGAGTTGGTACATGTTAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTTCAATTTGCTGACAGGAGCTGCGCAGAAGAGGCTTTGAGGGGCTTAAATGGAACAGTGTTGGGTGGGCAGAATGTTCGTCTCTCTTGGGGCCGTAGTCCTTCAAACAAACAGACTCAGCCAGATCAAAACCAGTGGAATGGAGCTGCTGGGTATTACGGATATACTCAGGGGTATGAGAACTATGGATATGCTCCAGCTACTGCACAGGATCCCAACATGTATGGAAACTATCCTGGGTACTCCAATTACCAACCACCACAGCAGCAGCAGCAGCAGCTAGGGTACAGTTGA 1218 0.4869 MMHPGPGMAPPTMGQQPPQQQYPQQQHPYMMMPPQAQAPPMWPPSVQPPPQSVAPPQTTQAVQPTTADEVRTLWIGDLQFWMDENYLYTCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQTFRLNWATFSSGERRHDDTPDYTIFVGDLASDVTDYMLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESEQMRAMTEMQGVLCSTRPMRIGPATNKNPGTQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRGLNGTVLGGQNVRLSWGRSPSNKQTQPDQNQWNGAAGYYGYTQGYENYGYAPATAQDPNMYGNYPGYSNYQPPQQQQQQLGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1399 405 CDD RRM1_SECp43_like 72 152 - -
Prci11g1399 405 MobiDBLite consensus disorder prediction 1 17 - -
Prci11g1399 405 CDD RRM2_SECp43_like 163 242 - -
Prci11g1399 405 SMART rrm1_1 72 147 IPR000504 GO:0003723
Prci11g1399 405 SMART rrm1_1 270 337 IPR000504 GO:0003723
Prci11g1399 405 SMART rrm1_1 165 239 IPR000504 GO:0003723
Prci11g1399 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 345 - -
Prci11g1399 405 SUPERFAMILY RNA-binding domain, RBD 158 256 IPR035979 GO:0003676
Prci11g1399 405 SUPERFAMILY RNA-binding domain, RBD 253 366 IPR035979 GO:0003676
Prci11g1399 405 Gene3D - 251 351 IPR012677 -
Prci11g1399 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Prci11g1399 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Prci11g1399 405 Gene3D - 10 154 IPR012677 -
Prci11g1399 405 Gene3D - 155 250 IPR012677 -
Prci11g1399 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Prci11g1399 405 MobiDBLite consensus disorder prediction 238 268 - -
Prci11g1399 405 MobiDBLite consensus disorder prediction 1 65 - -
Prci11g1399 405 SUPERFAMILY RNA-binding domain, RBD 30 153 IPR035979 GO:0003676
Prci11g1399 405 FunFam Polyadenylate-binding protein RBP45C 248 374 - -
Prci11g1399 405 FunFam Polyadenylate-binding protein RBP45C 156 247 - -
Prci11g1399 405 MobiDBLite consensus disorder prediction 235 268 - -
Prci11g1399 405 MobiDBLite consensus disorder prediction 383 405 - -
Prci11g1399 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Prci11g1399 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Prci11g1399 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Prci11g1399 405 MobiDBLite consensus disorder prediction 33 55 - -
Prci11g1399 405 FunFam Polyadenylate-binding protein RBP45 10 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1399 Prci-Chr11 11906669 11910474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1399 72 348 Eukaryotic Initiation Factors Gene Family AT4G34110 28.369 1.74e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1399 - - gmx:100796848 617.076