LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1369	ATGTTGTTCGTCTTCAAATCCTCTGCTAATGGTGCCCTTATCATATTTGTGTCCGTCTTGGGGTTGCTGTGTTTATCAGGAGAAGCTGTTCCTGTCCTCGTAAAAAACTGTACAAACGAAAACCATTTCCAATACAGCAGCAGATTCGAAGCAAATTTAGACTTGCTTCTATCTAATCTCGTCTCCAGCGCCTCCGGCGGTTTTTCGAGCAGCACCAAGGGTAATGGTTCCGTCAGCGTCAGTGGATTTTTTTTCTGCCGCGACGGAGCCATCCCCGCCGTATGCCGAGAGTGCGTGGCCACGGCAGCCAAAGAGATAACACGCCTGTGCCCGAACCAGACAGAATCCACAATCTGGTACGACGAGTGTCTCCTTCGTTACTCGAACCAATCCATCAGCGACCGCCCTTTGGTGAGCGTGTGGCACAATAGCATGGACAGTGACGAACAAGCTCTGATGGATAAAGTGTTGCCGAGTATGTTAGATACTTTGGTCGCGACAGCTATTTCCCCAAATCGGAATAACTTCGCGGTAGTGAACTCGCCATCATCATCGGAAAACTTCTCGGCCAGTGTGCAGTGTGTTGCAGACATGTCGGCTTCTCAATGTTCTCAATGTTTACAAAACGCCGTGGTATTTCTCCCGACCTGCTGTAGAGGGGAAAAGAACGCATCGGTCATGCTTCAGAAATGTAGTGTTAAATACGATCTTCATGGATTTGATACACCAACCACACCGATACTGCCTCCTCCTTCACCTTCAGGAAATTACCGAAATGGCCAATTTAAAGTGAAAAAGATTATTGTGATTGTCGTTCCTATTGGTTTTTCGGGGATTCTGCTGTGTCTGGTATGCTACTTCTTTCGGAGAAGAAAGAGGAAGAATTACAAGACGGTTCTCAGAGAAAACTTTGGAATTGAAAGCAGCTCTCTAGAATATTTGCAATTCGATCTTGCCACAATCGAAGCTGCCACAAGTAATTTCTCACAAAAGAACAGAATTGGGAAGGGTGGATTTGGAGAAGTTTACAAGGGAGTTCTTTTTGATGGGCGAGAAATAGCTATCAAAAGACTCTCAAGAAGATCTGGGCAAGGAGCACTGGAATTCAAAAATGAAATCTTATTAATAGCCAAACTTCAGCATAGAAATTTAGTAACACTGTTGGGATTTTGTTTAGAAGAGCAAGAGAAAATACTCATTTATGAATATGTACCTAACAAGAGCCTGGATTACTTTTTATTTGGCACTCAAAAGAAAAGCGTATTAGATTGGCTAACACGATATAAGATTATTGAAGGAATTGCTCAAGAAATTCTTTATCTTCACAAATATTCTCGTCTCAAAATTATATATCGTGATCTTAAACCAAGTAATATTTTATTGGATTACAACATGAATCCAAAAATATCTGACTTTGGTATGGCTAAAATTGTTGGTATAGATGAAATCCAAGGAAGTACAAATAGAGTTGTTGGAACATTTGGTTATATGCCTCCTGAATATATAATGTTTGGACAATTTTCTAAAAAGTTAGATATTTTTAGTTTTGGTGTTATAGTCTTGGAAATCATTAGCGGCAAGAAGAATGCCACTAGTTATGAAGCTCAACATGTTTATGGCCTCCTAGATTATGTTTCGAAGCAATGGAAGGATGAAAACTTGTTGGAGATTATGGATTCAAGTGTGGCAGAAGTTGGTTCACAAAGTGAAGTAATTAGATGCATCCATATTGGTTTGTTATGTGTTCAAGAAAATCCAGATGAGAGGCCTCCAATAGCCACAGTTGTTTCATATCTTAATAATGATTCAATTGCATTGCCGTATCCTAGAGAACCAGCATTCTCCATGCATGGTCGAATGAGAAATGAATCAGGTCCCAGTCAACACACCAGTAATTCTACACTCTGCTCTGTCAATCAAATGTCCGTCACTAATTTCTTTCCTCGCTAG	1950	0.4082	MLFVFKSSANGALIIFVSVLGLLCLSGEAVPVLVKNCTNENHFQYSSRFEANLDLLLSNLVSSASGGFSSSTKGNGSVSVSGFFFCRDGAIPAVCRECVATAAKEITRLCPNQTESTIWYDECLLRYSNQSISDRPLVSVWHNSMDSDEQALMDKVLPSMLDTLVATAISPNRNNFAVVNSPSSSENFSASVQCVADMSASQCSQCLQNAVVFLPTCCRGEKNASVMLQKCSVKYDLHGFDTPTTPILPPPSPSGNYRNGQFKVKKIIVIVVPIGFSGILLCLVCYFFRRRKRKNYKTVLRENFGIESSSLEYLQFDLATIEAATSNFSQKNRIGKGGFGEVYKGVLFDGREIAIKRLSRRSGQGALEFKNEILLIAKLQHRNLVTLLGFCLEEQEKILIYEYVPNKSLDYFLFGTQKKSVLDWLTRYKIIEGIAQEILYLHKYSRLKIIYRDLKPSNILLDYNMNPKISDFGMAKIVGIDEIQGSTNRVVGTFGYMPPEYIMFGQFSKKLDIFSFGVIVLEIISGKKNATSYEAQHVYGLLDYVSKQWKDENLLEIMDSSVAEVGSQSEVIRCIHIGLLCVQENPDERPPIATVVSYLNNDSIALPYPREPAFSMHGRMRNESGPSQHTSNSTLCSVNQMSVTNFFPR	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1369	649	FunFam	cysteine-rich receptor-like protein kinase 10	404	606	-	-
	Prci11g1369	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Prci11g1369	649	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	289	403	-	-
	Prci11g1369	649	SUPERFAMILY	Protein kinase-like (PK-like)	310	625	IPR011009	-
	Prci11g1369	649	Pfam	Salt stress response/antifungal	154	236	IPR002902	-
	Prci11g1369	649	Pfam	Salt stress response/antifungal	37	130	IPR002902	-
	Prci11g1369	649	SMART	serkin_6	328	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci11g1369	649	ProSiteProfiles	Gnk2-homologous domain profile.	134	240	IPR002902	-
	Prci11g1369	649	Gene3D	Transferase(Phosphotransferase) domain 1	404	605	-	-
	Prci11g1369	649	ProSiteProfiles	Gnk2-homologous domain profile.	31	132	IPR002902	-
	Prci11g1369	649	ProSiteProfiles	Protein kinase domain profile.	328	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci11g1369	649	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	645	-	-
	Prci11g1369	649	CDD	STKc_IRAK	334	601	-	-
	Prci11g1369	649	ProSitePatterns	Protein kinases ATP-binding region signature.	334	356	IPR017441	GO:0005524
	Prci11g1369	649	Gene3D	-	136	240	IPR038408	-
	Prci11g1369	649	Gene3D	-	30	131	IPR038408	-
	Prci11g1369	649	Gene3D	Phosphorylase Kinase; domain 1	289	403	-	-
	Prci11g1369	649	Pfam	Protein kinase domain	329	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1369	Prci-Chr11	11620635	11623872	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1369	37	649	Receptor kinase-like Gene Family	AT4G05200	43.119	9.13e-171	502

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Prci11g1369		Pkinase	2.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1369	-		-	ccaj:109813299	590.497