Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1365 ATGGACCCCCCAAATTTCTTATTTTCCCGAGAAAACCCTAGACCCCTCTCGTTCTCTACTGCTCCAATTGTCTCCTCAAAACCCATTATCCCCAATGAGATCGCCCAGAAGCCTCCCCCTTCGATTCTATTGGGCCGATTCAAGACTTTGCTAAAAGAACGCGAGGATGAATTCAGGGCTTCCTTTGGTGACGACGTGCCGGTGCCACCCCCTAGCACTGAAGAAATTGTGCAAATTTACCAGTTGTTATTGTCGGACCTCACTTGCAACTTGAAGCCTATCATTACGGATCTAACCATTATTGCTGAGCTTCAGATAGAGCATGCCAGGGGCATCGCCGATGCAATTTGCACTCGGATTCTCGAGGTGCCTGCAGATCAAAAGCTTCCATCGCTATATCTTTTGGACAGTATTGTGAAGAATGTTGGTCGGGAATATATTGGACACTTCTCTTCATGTCTGCCTGAAATTTTCTGTGAGGCATACAGGCAGGTTCACCCTAAGCTCCATAATGCTATGCGCCATCTCTTTGGCACCTGGTCAACGGTCTTTCTGCCTTCTGTCATACGCAAGATTGAAGCTCAACTGCAGTTTTCTCAAGCAATTAATGATCCGTCATCTACCACTGATCCCCTTAGGGTGTCTGAGTCTCGTCAAGCAACTCATGGCATACATATCAATCCGAAGTACTTGCAGCAGTTGGAACACTCTACTAATGATAGTGTTGGAGGTGAAAAATTGGAATCAACAGTAAATTTGGGTCTTGCAAATTTTGGCCGTGGAGTTAGTAAGATACATCAACCTTTATCTAGCAGGCTTGGAAGATCTCCACCATCAGGAATCGGACTTGATAGGCCTCCATCAGCAACTATAGATGAAATTGCAGTTCACAATTCTGCTGGCAGGCTAGTTGAGAGAGATACTCTTTCTCATCCTGCATTTGATTATGGAGTTGGTAAAGCAGGAAGTAGAACTGAAGAGTTGAGTGGGTGGAAACAACAATATTCTGATGATGGTCAGAACCAGTTTCAAGTTAATGGGCATCAGCGTCAAAGTCTTAAAGCTTTAATAGATGCATATGGCAGTGATAAAAACAACGAAACCTTCAATAATAAGCCTTTGGTGGTTGAGCGTCAGGACACAAATGGTATAAACAGGGTTGTGTCAACATCATGGCAAAACACTGAAGAGGAGGAATTTGACTGGGAAGATATGAGTCCAACATTAGTGGATCATAGTAGGAATAATGATTTCTTTCCATCAAGTATTGGTTTCTCCAGGGAAAGACCTGTTATTAGTGCAGCTACTTCAAACAGGATACTAGGCATAGTTGGTCTAGTCGGTCACAGCTTCCATCAATGGATGATTCCTCTGTTTTATGGACGTGGATCACCAGTTCATGTATCTGGATACCAAAATCAGACAAACCGGAGTTTAAACTCTCATCCACCTCTTGATGCTTGGAATATTAGAGGTCGAGCAAGCAATCTTCAGACATCCCCTGTCAGTAACATTCCAAATAGTGATATAAATCTATACGGGACTGGATCTGCTTTGTCCAGAATGGGTTCCACACTTGAGTCTAATGTGGAGATTCATCCAACAGTTTTACCAGCCACTCTTGGAATGAGGCCTCCAGTTAATGTTCATGCAATTCGCCCCCCCACTTTAAACCCAACATTTCCGTTGGATAAACATATCAGAAGTTACAGGTTTATCAAAGTTGCATCACTTGCCAAGCCAGCTAGCTGGCAGATTTCATTTAACCAGCAAAACTGTGGACAAGCACAAATCTTTCCTTCTCAGGACATGCAAGAAAAGTTACTTAGATCACAAGCTCCAACACCTTTGCAATTTAGTCGTGGAAGCTTCTTGCAAGGACATATTGATGCTATAAGTACAGCCATGCCAAATTCGCTTCCTGCTGTACAATTCCCTATTCCAGTCCAAAATATTGCAAATAACTCTTCTCACTTACAAAGGGGAAACTTGATGTCTTTACCTCCAATGTCCCATCCTGCTATGTCACGAACAATACCGCATTCAAATGCTGGTCCTAATGTGTCAGCCCGACGGCCAGGGGGTGCATTTTCTGGTTTAATTAATTCCCTTATGTCCCAAGGTTTGGTATCATTGACAAATCAACCTCCCAAACAGGATTCTGTTGGAACCGAGTTTAATCCTGATGTTCTAAAGATTTGTCATGAGTCTGCAATCTGTGCCTTGTATGGTGATCTTCCTAGACAATGCACTACTTGTGGCCTTCGATTCAAATGCCAAGAGGAGCACCGTAGTCATATGGATTGGCATGTTACTAAGAACCGGATGTCTAAAAACCGTAAGCAGAAGCCTTCTCGCAAGTGGTTTGTGAGTGAGAGTATGTGGCTTAGTGGCGCAGAGGCATTGGGAACAGAATCAGTCCCTGGTTTTTTGCCAACTGAGGATGTAGAAGAAAAAAAATGCGATGAAGAGTTATCTGTGCCAGCTGATGAGGATCAGAATACATGTGCATTATGTGGTGAGCCTTTCGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATATGTCAATGCACCCAATGGAACAGTAGCTGGCATGGATAGGTCGCAGTTAGGCCCCATTGTTCATGCGAAGTGCAGATCTGAGTCTAGTGTGGTCCCCGCTGAAGATATTGGACTGGATGAAAGGGGCACCGATGAGGAGGGTAGCCGACGAAAACGAATGCGAAGTTAA 2751 0.4387 MDPPNFLFSRENPRPLSFSTAPIVSSKPIIPNEIAQKPPPSILLGRFKTLLKEREDEFRASFGDDVPVPPPSTEEIVQIYQLLLSDLTCNLKPIITDLTIIAELQIEHARGIADAICTRILEVPADQKLPSLYLLDSIVKNVGREYIGHFSSCLPEIFCEAYRQVHPKLHNAMRHLFGTWSTVFLPSVIRKIEAQLQFSQAINDPSSTTDPLRVSESRQATHGIHINPKYLQQLEHSTNDSVGGEKLESTVNLGLANFGRGVSKIHQPLSSRLGRSPPSGIGLDRPPSATIDEIAVHNSAGRLVERDTLSHPAFDYGVGKAGSRTEELSGWKQQYSDDGQNQFQVNGHQRQSLKALIDAYGSDKNNETFNNKPLVVERQDTNGINRVVSTSWQNTEEEEFDWEDMSPTLVDHSRNNDFFPSSIGFSRERPVISAATSNRILGIVGLVGHSFHQWMIPLFYGRGSPVHVSGYQNQTNRSLNSHPPLDAWNIRGRASNLQTSPVSNIPNSDINLYGTGSALSRMGSTLESNVEIHPTVLPATLGMRPPVNVHAIRPPTLNPTFPLDKHIRSYRFIKVASLAKPASWQISFNQQNCGQAQIFPSQDMQEKLLRSQAPTPLQFSRGSFLQGHIDAISTAMPNSLPAVQFPIPVQNIANNSSHLQRGNLMSLPPMSHPAMSRTIPHSNAGPNVSARRPGGAFSGLINSLMSQGLVSLTNQPPKQDSVGTEFNPDVLKICHESAICALYGDLPRQCTTCGLRFKCQEEHRSHMDWHVTKNRMSKNRKQKPSRKWFVSESMWLSGAEALGTESVPGFLPTEDVEEKKCDEELSVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYVNAPNGTVAGMDRSQLGPIVHAKCRSESSVVPAEDIGLDERGTDEEGSRRKRMRS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1365 916 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Prci11g1365 916 ProSitePatterns Zinc finger C2H2 type domain signature. 750 770 IPR013087 -
Prci11g1365 916 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Prci11g1365 916 SMART 558neu5 75 197 IPR006569 -
Prci11g1365 916 Pfam CID domain 92 189 IPR006569 -
Prci11g1365 916 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 69 904 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Prci11g1365 916 CDD CID_Pcf11 80 196 IPR047415 -
Prci11g1365 916 MobiDBLite consensus disorder prediction 888 916 - -
Prci11g1365 916 SUPERFAMILY ENTH/VHS domain 71 201 IPR008942 -
Prci11g1365 916 Gene3D - 70 198 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1365 Prci-Chr11 11570545 11578730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1365 616 916 C2H2 Transcription Factor Family AT4G04885 57.188 5.61e-107 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1365 K14400 - gmx:100794796 1047.73