Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1358 ATGCTCCTGCCCCAATTGCTGAATAATCCCCAATTCACCATGGCTGCCTCCCACCACCACCAGCCTCTCCTCCTCCACAAACCCAACAAATCAATTTCCAGAACCTTCTGCCTTCTAGCTGCCCTTATCAGCTCTGCTCTTGTTGCTTCTTATCTCTTCTCTCCCTCCTCCTTCGTCATCTTCCACCTCTCTCACCCTCACCGTATCTGCTACCATGCCCTTCACAAACAATCATGCTTGTCCCATCTCTCCGAATTTCCCGAACTTTCCATCTTTGCCTCAAAAGACCAAGAGTCCCACTTGCTCCATTCCTTCTTATTGAAAACCACCTCACAGATACAAACAACCATGGACTCAACCAAAGCCATCAAATACAGAATCAACGATCCAAAACAGCAACAATCTCTGCTTGTCTGTGAGAAACTTCTGGACTTGTCCCTTGATAGAGTTTGGGACTCGATGGTCTCTCTCACGGAAAAGACCATCAGATCCTACCAAGATGCCCACACATGGCTAAGCAGTGTCCTCACTAACCACATCACTTGCTTGGATGAGTTAGAAGGGTCAGCTCGATCTCTCATAGAGTCTGAGCTCAATGGCTTGGTCTCCAGAGCGAGAACCTCCCTAGCCATGCTTGTTCATGTTATGCCCTCTAACATCGATGCTATCGAAGAACCACTTAATGGGGAGCTTCCCTCATGGGTGACGAGCAAGGATCGGAAGCTTCTGGAAACTTCTGCTAGTGATATAAAGGCTAACGTTGTGGTGGCTAAGGATGGAAGTGGCAGGTTTAAAACAGTGAACGAGGCCGTGGCTTCAGCCCCAGATAAGAGTAAGACGAGGTATGTGATACATGTGAAGAAGGGAGTTTATAAAGAGAATGTTGAGATTGGATCCAAGAAGAAGAATGTGATGCTTGTGGGTGATGGTAAGGATGCCACTATCATCACCGGAAGCTTGAATTTCATCGACGGAACACCCACCTTCAGAACTGCCACCGTCGCCGCGGTTGGGGATGGATTCATAGCGCAAGACATATGGTTCCAAAACACAGCAGGTCCTCAGAAGCACCAGGCGGTGGCTCTCCGCGTCGGCGCCGATCTCTCCGTCATCAACCGCTGCCGCGTCGACGCCTTCCAAGACACTCTCTACGCCCACTCCAACCGGCAATTCTACCGTGACTCCATTATCAAAGGCACCGTCGACTTCATCTTCGGCAATGCCGCCGTCGTGTTCCAAAAATGCTTCCTTGAGGCTCGGAAGCCAATGGCTAAACAGAACAACATGGTGACGGCTCAAGGACGCGAAGACCCGAACCAGAACACGGGGACTTCCATCCAGCAGTGTAACCTGACACCGAGCTCCGATCTCAAGCCCGTCGTGGGTTCAGTCAAAACCTATTTGGGTCGTCCGTGGAAGGAGTACTCTCGAACTGTGGTGATGCAATCGTTCCTGAGTAGCCACATCGACCCAACGGGATGGGCTCCGTGGGACGACAAGCAATCGACATTGAAGAATTTGTATTATGGAGAGTACATGAACAAAGGACCCGGTGCTGGTACTGCGAAGAGAGTGAAATGGCCTGGGTATCACGTGATTACAAGTGCTTCGGAGGCCAGCAAATTCACAGTGGCTCAGCTCATTCAAGGTGGCTCTTGGCTGAAGAACACTGGAGTCGACTTCATTGAGGGACTCTAG 1698 0.5041 MLLPQLLNNPQFTMAASHHHQPLLLHKPNKSISRTFCLLAALISSALVASYLFSPSSFVIFHLSHPHRICYHALHKQSCLSHLSEFPELSIFASKDQESHLLHSFLLKTTSQIQTTMDSTKAIKYRINDPKQQQSLLVCEKLLDLSLDRVWDSMVSLTEKTIRSYQDAHTWLSSVLTNHITCLDELEGSARSLIESELNGLVSRARTSLAMLVHVMPSNIDAIEEPLNGELPSWVTSKDRKLLETSASDIKANVVVAKDGSGRFKTVNEAVASAPDKSKTRYVIHVKKGVYKENVEIGSKKKNVMLVGDGKDATIITGSLNFIDGTPTFRTATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADLSVINRCRVDAFQDTLYAHSNRQFYRDSIIKGTVDFIFGNAAVVFQKCFLEARKPMAKQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSVKTYLGRPWKEYSRTVVMQSFLSSHIDPTGWAPWDDKQSTLKNLYYGEYMNKGPGAGTAKRVKWPGYHVITSASEASKFTVAQLIQGGSWLKNTGVDFIEGL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1358 565 Gene3D - 246 565 IPR012334 -
Prci11g1358 565 PANTHER PECTINESTERASE 51 555 - -
Prci11g1358 565 FunFam Pectinesterase 247 565 - -
Prci11g1358 565 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Prci11g1358 565 Pfam Plant invertase/pectin methylesterase inhibitor 67 200 IPR006501 GO:0004857
Prci11g1358 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 210 IPR035513 -
Prci11g1358 565 CDD PMEI-like_4 70 213 - -
Prci11g1358 565 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Prci11g1358 565 NCBIfam pectinesterase inhibitor domain 40 190 IPR006501 GO:0004857
Prci11g1358 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 215 IPR035513 -
Prci11g1358 565 SMART PMEI_2 61 211 IPR006501 GO:0004857
Prci11g1358 565 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Prci11g1358 565 Pfam Pectinesterase 253 550 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1358 Prci-Chr11 11533449 11536303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1358 17 565 Carbohydrate Esterase AT1G11580 55.773 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1358 K01051 - gmx:100815836 788.875