Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1350 ATGGCTGCCTCAGAACATTCTTCCACTGATGAAGCCTTGGAGAACCTTCAAGAGGAGACCAGCAAACAATCAAAGCTAGAATTTTCCAGCGATGAGGAGGAATTGATTATCAGAATGTACAAACTAGTTGGTGAAAGGTGGGCTTTAATAGCTGGGAGGATCCCTGGAAGAACAGCTGAACAGATTGAAAAATACTGGACTGCGACGTACTCAACAAGTGAATGA 225 0.4356 MAASEHSSTDEALENLQEETSKQSKLEFSSDEEELIIRMYKLVGERWALIAGRIPGRTAEQIEKYWTATYSTSE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1350 74 SMART sant 24 72 IPR001005 -
Prci11g1350 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
Prci11g1350 74 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Prci11g1350 74 MobiDBLite consensus disorder prediction 1 29 - -
Prci11g1350 74 Pfam Myb-like DNA-binding domain 27 66 IPR001005 -
Prci11g1350 74 Gene3D - 27 69 - -
Prci11g1350 74 CDD SANT 27 66 IPR001005 -
Prci11g1350 74 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Prci11g1350 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 26 71 - -
Prci11g1350 74 MobiDBLite consensus disorder prediction 11 29 - -
Prci11g1350 74 FunFam MYB-like transcription factor 27 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1350 Prci-Chr11 11491138 11492053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1350 27 71 MYB Transcription Factor Family AT5G14750 53.333 4.75e-15 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci11g1350 Myb_DNA-binding 5.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1350 - - pcin:129298854 147.902