Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci11g1302 | ATGGATCTTCTGAAACAAACCAAGAAAACGACAACCACAGGTCGCAAGAAGATCGAGATAAAGGAGATAGACAAGGACTCGAACAAACAAGTTACCTTCTCAAAACGACGCACCGGACTGTTTAAGAAAGCCAGCGAGCTCTGCGTCTTGTGCAATGCTCAGGTCGCCATGATCGTGTTCTCGCCGGCCGACAAAGCCTTCTGCTTTGGCCAACCCAACGTTGAAGCCGTCCTCCTCCGCTACCTCCGCGGAGGAACAGAAGACCACGACGAACCTGCTATCAGGCAGGCGGCGAGCGAGACCAGTCCGGTGTATTACGAGGAACTTAACAGACAACACGAGGAAGCAGTGAAGGCGTTGGAGATGGAGAAGCAACAATTGGAGGAGATAGAGAATGTGGCTAAGGTATGGAACAGAGGAAACTGGTGGGACGAACCGATTGATGAGATGGATTTGGATCAGTTAGAGCAGTATGTGGTGGCCATGCATGAGTTAAGAAGAAAGGCGGCTGAGAAGGCCGATGAGATGATGAGGGTTGCGATAATGCCGTCGGTGCCATCGTTTTACGGAGAAAGTTCATTGGGCGGTCTTCTTAATGGAGGTGGTGGCTATGGCGGTTTTGCTAATAACCAGTTTGGTGGCGGTGGTCTTGTTGCTTATCATGACAAGTTCGAATTTTGA | 681 | 0.5022 | MDLLKQTKKTTTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQVAMIVFSPADKAFCFGQPNVEAVLLRYLRGGTEDHDEPAIRQAASETSPVYYEELNRQHEEAVKALEMEKQQLEEIENVAKVWNRGNWWDEPIDEMDLDQLEQYVVAMHELRRKAAEKADEMMRVAIMPSVPSFYGESSLGGLLNGGGGYGGFANNQFGGGGLVAYHDKFEF | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci11g1302 | 226 | CDD | MADS_MEF2_like | 18 | 82 | IPR033896 | GO:0000977|GO:0045944 | |
| Prci11g1302 | 226 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 23 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | ProSiteProfiles | MADS-box domain profile. | 13 | 73 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | Coils | Coil | 155 | 175 | - | - | |
| Prci11g1302 | 226 | Coils | Coil | 106 | 133 | - | - | |
| Prci11g1302 | 226 | FunFam | Agamous-like MADS-box protein AGL62 | 25 | 91 | - | - | |
| Prci11g1302 | 226 | SMART | madsneu2 | 13 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | PANTHER | MADS BOX PROTEIN | 15 | 170 | - | - | |
| Prci11g1302 | 226 | Gene3D | - | 25 | 89 | IPR036879 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | SUPERFAMILY | SRF-like | 14 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | PRINTS | MADS domain signature | 15 | 35 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | PRINTS | MADS domain signature | 35 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci11g1302 | 226 | PRINTS | MADS domain signature | 50 | 71 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci11g1302 | Prci-Chr11 | 11056848 | 11057528 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci11g1302 | 12 | 204 | Type I MADS-box Gene Family | AT2G24840 | 38.278 | 1.42e-39 | 135 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MADS-M-type | Prci11g1302 | SRF-TF | 4.8e-23 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci11g1302 | - | - | pcin:129286086 | 404.831 |