Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1301 ATGGCGATGAACAAAAAGTGTAGCTCAGGTCGTCAAAAGATTCCGATTGAGAAGATACCAAAGAAAAGCAATTTACAGGTCACATTCTCGAAGCGTCGTTCAGGACTGTTCAAGAAAGCCAGTGAGCTTTGTACGCTTTGCGGGGTTGAAATCGCCATTATAGTATTCTCACCAGCTAACAAAGCTTTCTCTTTTGGCCACCCAGGAGTTGAATCCATAATCGATCGCTATCTAGTTTCTCGAAAATCATCGCACCATGCAGATCATGGCTACTCATCATCATCGTCATCAATCATCAGCAGTAGTGACGTTCATCGGAATTCTAACGTTTGTAATCTTAATATGCAGTTGACGCAGATTCTTAACCAGGTCGATATGGAGAAGAAGCGAGGAGAAGAACTTGATCGAGCGAGGAAAGTGAGGCAGAGAGAGTTCTGGTGGGAGAGTCCTATCGATGAGCTTGATTCAGTTGATCAGTTACAGCAATTGAGGATTGCAATGGAGGACCTCAAGAAGGATGTGTTAAGGCAAAACAGAACTTTTTCTACTTCTTGTTCATCGTCGTCACAGATCATTGTCGGGGAAGATTACGGGTTATTCGAACGTTACGATGATGTCGTCTTTGACAAGAAGTTATTATTAGGTGGTGCTGAGATTAATGTTGCTGCTAATTCGTCCGGTGTTATTCCTGATCATGATGCCTTTAATAACCTTATTTACCAAAACCACGACATGGGGATCTTTAAGTTCACTTCACAGTTCTGA 765 0.4235 MAMNKKCSSGRQKIPIEKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPANKAFSFGHPGVESIIDRYLVSRKSSHHADHGYSSSSSSIISSSDVHRNSNVCNLNMQLTQILNQVDMEKKRGEELDRARKVRQREFWWESPIDELDSVDQLQQLRIAMEDLKKDVLRQNRTFSTSCSSSSQIIVGEDYGLFERYDDVVFDKKLLLGGAEINVAANSSGVIPDHDAFNNLIYQNHDMGIFKFTSQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1301 254 CDD MADS_MEF2_like 10 85 IPR033896 GO:0000977|GO:0045944
Prci11g1301 254 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 Coils Coil 160 180 - -
Prci11g1301 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 Gene3D - 21 101 IPR036879 GO:0003677|GO:0046983
Prci11g1301 254 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 Gene3D - 102 193 - -
Prci11g1301 254 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Prci11g1301 254 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
Prci11g1301 254 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Prci11g1301 254 PANTHER MADS BOX PROTEIN 11 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1301 Prci-Chr11 11050608 11051372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1301 8 184 Type I MADS-box Gene Family AT2G24840 52.222 1.00e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g1301 SRF-TF 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1301 - - pcin:129286085 464.151