Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1300 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGGTTGAGATGAAGAAGATGACCAACGAGAGTAACTTGCAGGTCACTTTCTCGAAGCGTCGCACTGGGCTTTTCAAGAAAGCTAGTGAGCTTTGTACTCTTTGTGGCGCCGAGGTTGCTCTCATCGTCTTCTCCCCTGGCGAGAAGGTGTTCTCTTTCGGCCACCCCAGCGTTGACACCGTGGTGGATCGCTACCTCACGCGAGCCCCACCGCCACAGACCTCCGGCACCATGCAGCTCATCGAGGCTCACCGCAACGCCAACGTGCGCGAGCTCATCGGCCAGTTTACTCAAATCTCTACCCAGCTTGATGACGAGAAGAAGCGCAGTGATGAATTGAATCATATGCGAAAGGCCACTCAGGGTCAGTGCTGGTGGGCAGCCCCAATAGAAGAAATGACAAAGTCACAGCTTGAGGAGTTCAAGATGGCATTGGAGGAGCTAAAGAGGGGTGTGACGAGGCAGGCTGATCGGATGGTACTGATTCAAAGTGCAAGTAACACATCAAATCAGTTTTTGGTCGGCGGTTCTTCTTCCAATGTGGTGGCTTCGCCTCTACTGTCTCACCAGGGGTTTCAGTCGCTGCCACCACCAGTGGGTCAGAATAATCCTGCTGGGTTTGATGGCAGCCATGGATTTGCAAGACCAGGGTTTTACTGA 693 0.5325 MSTSRRSKGRQKVEMKKMTNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPSVDTVVDRYLTRAPPPQTSGTMQLIEAHRNANVRELIGQFTQISTQLDDEKKRSDELNHMRKATQGQCWWAAPIEEMTKSQLEEFKMALEELKRGVTRQADRMVLIQSASNTSNQFLVGGSSSNVVASPLLSHQGFQSLPPPVGQNNPAGFDGSHGFARPGFY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1300 230 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 MobiDBLite consensus disorder prediction 1 20 - -
Prci11g1300 230 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Prci11g1300 230 Gene3D - 89 184 - -
Prci11g1300 230 SUPERFAMILY SRF-like 9 94 IPR036879 GO:0003677|GO:0046983
Prci11g1300 230 PANTHER MADS BOX PROTEIN 10 166 - -
Prci11g1300 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Prci11g1300 230 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Prci11g1300 230 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1300 Prci-Chr11 11045324 11046509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1300 5 191 Type I MADS-box Gene Family AT5G60440 57.672 1.48e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g1300 SRF-TF 8.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1300 - - pper:18768967 266.929