Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1273 ATGATGGTGACGAAGGTGTTTGTTTTGAGAACGCAGCTAAGCAACTACTGTTCATTTGAGGGGGTGCTGTATTGCAGACCCCATTATGATCAACTCTACAAGCGAACTGGTAGCCTCGACAAGAGCTTTGAAGGAACACCCAAGATTCTGAAACATGAAAAAGTACAAACTGAGAATGAGAATGCAAAGATTCTCTCAAATGTGTTCTTGGGCACCAAAGACAAATGTGCAGGTTGCCAGAAGACAGTTTATCCCACTGAGAGGGTAACAGTGAATGGGACTCCATATCACAAAGGATGCTTCAAGTGCAGCCATGGAGGTTGCACCATAACGTCAGCCAATTTCATCTCGCATGAGGGAAAGCTATACTGCAAACACCATCACATCCAACTTTTCAAAGAAAAAGGCAATTACAGTCAGCTTGACGGCGACCGTGCCGGCAACCCTTCCTTGAAAGAAAACGATGAACGTGTAGGAGAGGCACAACTGTTTGATGGAGAACAAGGTTGCAATGATGACTGTACCTCGTTATGTGAAACAGAAACTTCGTTGGTCTCGAGGGATTCTTCCCCAACATGGCATGAAAATGCTTCTTGTTCATCTTCTCGCGGGTTTGTTTCTGAATCTGACGTGGATCAGCTTGCAGGGGATGTTATTCCGATGAGTCATTCAGAGAGCGAGGGGAAGAATCGAGACCCACAGAATGTGCTTGAAAAACTGAACTTTCAGCTGTTAGATACAAATGGAAGGGAGATGAAAATAAAAGTGACATACAGGACTTTTGAGAAGAAGAAAAAGAAATCTAGAAAGGAGTCAAATTCCTCACTCAACTCATGTGCAGGTGAAAAGGGAAGGAATGGCAAGTCTGTTAAGTCATGA 879 0.438 MMVTKVFVLRTQLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKHEKVQTENENAKILSNVFLGTKDKCAGCQKTVYPTERVTVNGTPYHKGCFKCSHGGCTITSANFISHEGKLYCKHHHIQLFKEKGNYSQLDGDRAGNPSLKENDERVGEAQLFDGEQGCNDDCTSLCETETSLVSRDSSPTWHENASCSSSRGFVSESDVDQLAGDVIPMSHSESEGKNRDPQNVLEKLNFQLLDTNGREMKIKVTYRTFEKKKKKSRKESNSSLNSCAGEKGRNGKSVKS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1273 292 ProSiteProfiles LIM domain profile. 74 134 IPR001781 -
Prci11g1273 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 141 - -
Prci11g1273 292 SMART lim_4 75 127 IPR001781 -
Prci11g1273 292 FunFam LIM domain and actin-binding 1 70 140 - -
Prci11g1273 292 Pfam LIM domain 76 131 IPR001781 -
Prci11g1273 292 MobiDBLite consensus disorder prediction 261 292 - -
Prci11g1273 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 43 - -
Prci11g1273 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 68 101 - -
Prci11g1273 292 CDD LIM2_SF3 76 136 - -
Prci11g1273 292 Gene3D Cysteine Rich Protein 71 140 - -
Prci11g1273 292 PANTHER OS06G0237300 PROTEIN 13 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1273 Prci-Chr11 10883560 10888174 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci11g1273 LIM 5e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1273 K09377 - gmx:100306027 248.44