Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci11g1272 | ATGGCCAGTTTCGTAGGAACCACACAGAAGTGCACGGTCTGCGACAAAACCGCCTATCCCGTCGATAGGTTAACCGCCGACGGCCGTGTTTACCATAAGGCTTGCTTCCGATGCCACCATTGCCGTAATACCCTCAAGCTAAGCAACTACTGTTCATTTGAGGGGGTGCTGTATTGCAGACCCCATTATGATCAACTCTACAAGCGAACTGGTAGCCTCGACAAGAGCTTTGAAGGAACACCCAAGATTCTGAAACATGAAAAAGTACAAACTGAGAATGAGAATGCAAAGATTCTCTCAAATGTGTTCTTGGGCACCAAAGACAAATGTGCAGGTTGCCAGAAGACAGTTTATCCCACTGAGAGGGTAACAGTGAATGGGACTCCATATCACAAAGGATGCTTCAAGTGCAGCCATGGAGGTTGCACCATAACGTCAGCCAATTTCATCTCGCATGAGGGAAAGCTATACTGCAAACACCATCACATCCAACTTTTCAAAGAAAAAGGCAATTACAGTCAGCTTGACGGCGACCGTGCCGGCAACCCTTCCTTGAAAGAAAACGATGAACGTGTAGGAGAGGCACAACTGTTTGATGGAGAACAAGGTTGCAATGATGACTGTACCTCGTTATGTGAAACAGAAACTTCGTTGGTCTCGAGGGATTCTTCCCCAACATGGCATGAAAATGCTTCTTGTTCATCTTCTCGCGGGTTTGTTTCTGAATCTGACGTGGATCAGCTTGCAGGGGATGTTATTCCGATGAGTCATTCAGAGAGCGAGGGGAAGAATCGAGACCCACAGAATGTGCTTGAAAAACTGAACTTTCAGCTGTTAGATACAAATGGAAGGGAGATGAAAATAAAAGTGACATACAGGACTTTTGAGAAGAAGAAAAAGAAATCTAGAAAGGAGTCAAATTCCTCACTCAACTCATGTGCAGGTGAAAAGGGAAGGAATGGCAAGTCTGTTAAGTCATGA | 981 | 0.4526 | MASFVGTTQKCTVCDKTAYPVDRLTADGRVYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKHEKVQTENENAKILSNVFLGTKDKCAGCQKTVYPTERVTVNGTPYHKGCFKCSHGGCTITSANFISHEGKLYCKHHHIQLFKEKGNYSQLDGDRAGNPSLKENDERVGEAQLFDGEQGCNDDCTSLCETETSLVSRDSSPTWHENASCSSSRGFVSESDVDQLAGDVIPMSHSESEGKNRDPQNVLEKLNFQLLDTNGREMKIKVTYRTFEKKKKKSRKESNSSLNSCAGEKGRNGKSVKS | 326 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci11g1272 | 326 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Prci11g1272 | 326 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
| Prci11g1272 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Prci11g1272 | 326 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Prci11g1272 | 326 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Prci11g1272 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
| Prci11g1272 | 326 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Prci11g1272 | 326 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
| Prci11g1272 | 326 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
| Prci11g1272 | 326 | PANTHER | OS06G0237300 PROTEIN | 6 | 89 | - | - | |
| Prci11g1272 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
| Prci11g1272 | 326 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
| Prci11g1272 | 326 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Prci11g1272 | 326 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
| Prci11g1272 | 326 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Prci11g1272 | 326 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
| Prci11g1272 | 326 | MobiDBLite | consensus disorder prediction | 295 | 326 | - | - | |
| Prci11g1272 | 326 | Gene3D | Cysteine Rich Protein | 105 | 174 | - | - | |
| Prci11g1272 | 326 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci11g1272 | Prci-Chr11 | 10883542 | 10888174 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Prci11g1272 | LIM | 6e-13 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci11g1272 | K09377 | - | gmx:100306027 | 328.176 |