Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1252 ATGGAGCCTGCTAGTGACATAATCTCTGAAGAATGGAGCTCTCTTAGTGGGTTTTACACTGCCCAGGAAGCTGAGTTCATGACCCAGTTTCTTGAAAACTGTTCAGTCCCAGATGATCTCCATAGGAATGCCAACTTTGGATTTCAATCATCTTCTGCATTTTGGCCTATAGGCATCAGTACTGGTGACGAAAGCTTCTATTTCCCTTCAAATGTTGCTGATCCTACTATTAACTTTGGTTCCATGTCCATGGATTGTGAAGTACAAGCTTCTGAGCCAGTACAAGAGGATGATAAAAGCAGCTCCATGGAGAACTCTGGAAAGAGATCAAGGAACTCAACTGAGATCCCAAAGGACAAGAGGAGTGTTAAGCCCAGGGAGAATTTAAAGTGTTCAACAAGCAACAAGGAAGAGGATAATAGAAATAGAAGCAACGAAGGCCTTCAGGGGAAGAACTCTAGCAGATATAGCTCATCAGATGATAACTCCAATACTTCTGAGGAAGATGACATAAGCCCTAAAAACAATATAGATCTCAAGCCAAATCGAAAATCAAGATCTGATAGAGGTCATGCCACTGATCCTCAGTGCGCGAGCGCAAGAAGAAGAAGAGAGAGAATAAATGAAAGGTTGAGAATCTTACAAAACCTTGTCCCTAATGGAACAAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAATTTCTACAACTTCAAATTAAGCTTTTAAGCTCTGATGACTTGTGGATGTATGCTCCTATTGCTTACAACGGATTGCATATTGGATTAGACCTCAATATCACCCCAACCAAACAACCTCAAAGAAAGGCAATAGGAACAGGATGCACCATTTTTTCTTTTCCCAAGGACATTATGTCATGA 894 0.4116 MEPASDIISEEWSSLSGFYTAQEAEFMTQFLENCSVPDDLHRNANFGFQSSSAFWPIGISTGDESFYFPSNVADPTINFGSMSMDCEVQASEPVQEDDKSSSMENSGKRSRNSTEIPKDKRSVKPRENLKCSTSNKEEDNRNRSNEGLQGKNSSRYSSSDDNSNTSEEDDISPKNNIDLKPNRKSRSDRGHATDPQCASARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGLHIGLDLNITPTKQPQRKAIGTGCTIFSFPKDIMS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1252 297 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 85 256 IPR045843 GO:0003700|GO:0006355
Prci11g1252 297 MobiDBLite consensus disorder prediction 146 161 - -
Prci11g1252 297 MobiDBLite consensus disorder prediction 89 204 - -
Prci11g1252 297 FunFam Basic helix-loop-helix transcription factor 192 249 - -
Prci11g1252 297 SMART finulus 197 246 IPR011598 GO:0046983
Prci11g1252 297 MobiDBLite consensus disorder prediction 92 145 - -
Prci11g1252 297 Pfam Helix-loop-helix DNA-binding domain 201 241 IPR011598 GO:0046983
Prci11g1252 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 257 IPR036638 GO:0046983
Prci11g1252 297 Gene3D - 191 249 IPR036638 GO:0046983
Prci11g1252 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Prci11g1252 297 MobiDBLite consensus disorder prediction 167 204 - -
Prci11g1252 297 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1252 Prci-Chr11 10802936 10804438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1252 11 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.988 6.17e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci11g1252 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1252 - - pcin:129285148 578.17