Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1228 ATGGCAGCCAATGCTATTGGCATGGATGCTTCATCAGAGAAAATGAGTGGTGAAATGAGAAAGCTAATATGCCATAACCAAAACACCTCAGAATCACTACATACATCTGATCCTGGAACTTACCATTTTGGATCCTCAGGAAAAAACAATGAGACTGATTCTGAATTTTTGGACAAAAAACTTAGCACTGAGGAAGCCAACTCTTCTGTTGATGAAAAATCACCTAAGGTTTCTGATGGTATGGCTGAAAATTTGGCCATTCAACTGCCTGCAGAACCTCATTGTGATTTAGGCAACAGTTGTCAGAATGGGGAAGGTACATGCTTTCAGCATAATACCTTAGAGCAGGCCAATGCAATCGGCATGGAGGTTCCCTCCTATCAAATGAGTAGTGAAACCAGGGAGCTAAGATGCCATAATAACAATACCTCAGACCAGCTGCATACACTTGATCTGGGAAATACACTTTCTGAATTGTCAGAAAAAACTAATCAGATTGGCTCTGAATCTTTGGATAATGAACAGAGGGTTCTTGGCACAAGGCAAACCACCTCTCTTCTTCATGAAAAATCACCTTCAGATGGCATGACTGGGACTTCTGTTATTCAAGTTCCTGTACAACCTCAATGTGACTTAGACAAGAGCTGTCAAACTGAAGAAGGTTCAAGTTTTCAACTTAATACTTTAGAACTGGGCAAGATTATTGGCATGGATGCTTCCTCAGATCACTTGAGTAGCAAAACTGCAAGGTCAACGTGCCATATCCATAATACCTCAGAAAAGTTGCAGACATTTGATCCCAGAACTGCTCATTTTGAAATGTCAGAGAAAACTAATCAGACAGGCTCTGAATTTTTGAACAATGAACAAAAGGTCCTAGGTACTGGGGAAACTAGCTCTCTTCTTGATGGAAAACAACTTAAAGTTTCTGACAGTATGACTGGAGATTCTGTTATTCAATTGCCAGCAGAATCTCAATGTGACTTAGACAATGTTAGCCAGAATGGAGGAGGTTCATGCTTTCAATATGATACCTTAAAACAGGTTTCTGGTTCTTTATCTAATGATGAATTCCAGAACAAACACCAGCAGGCCTCCCAAAGTGTTCATAATGAGCCTGTGGAAAGAAGTGGTGGAAATGAACAATTAGATCCACCTTCTCAAGATACTGCCAAGGTAAGTAGCCCTAACTTTTTGCAAAGAAACTCCAGAAGGGCAACTCATGCCCGGGTAGGGCGCAAGGATAAAAGAACTGCAACATCATTGAAGAAAAAATATATGCTAAGGAGTAGTGATAGAGTTTTGCGGTCAAGGATGCGTGAAAAACCTAAACCACCCACATCAAACACTAATCTGGTTAATGTGGATCATGTTGGAGAAAATAGAAGAAAAGGCAAGAAGAAGAAGAAGAAGGGTAGAGGAAGGAGAGTGACTGATGAGTTTTCAAGAATCAGAGCTCGTCTAAGATATTTTTTAAGTCAAGTGCGCTATAAGCAGAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGCTTGGAAAAATTAAAGCCCGAGAAGGAGCTTCAATGTGCTAAGTCTAAAATACTTGGGTTTAAATTGAAAATCAGGGATTTGTTTCGACATTTGGATACATTGTGTGCTGAAGGGAGGCTTCCACAATCCTTGTTTGATTCCAAAGGAGAGATTTGTAGTGAGGATATATTTTGTGCAAAATGCATGTCCAAAGACTTGACCACTGGTAATGATATAATACTTTGTGACGGTGTTTGTGATCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTATTATCTGAAAATATTCCACCTGATGATGAGGGTTGGCTATGCCCGGGATGTGATTGCAAAGATGACTGTTTTGATCTCCTTAATGATCTCTTAGGAACAAGCCTCTCTATTTATGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCTGCAGTTGCTGGAAATAAAGTGGATGGCAACTTGGGACTTCCATCAGATGATTCCGATGATGATGATTATAATCCTGATGTCACAGCAGATGAGGAGGTTGAAGGAGGCAAGTCAAGTTCTGATGAGTCTGAGAATGCTTCTGCTTCTGAGAAAATGGAGGCTCCACACAGTGGGAATCCATACTTAGGCCTTCCTTCTGATGATTCAGAGGACAACGATTATGATCCTAGTGCTGTCGATCATGACAAAGATGCAGCTGAAGAAAGTTCAGGTTCTGATTTCACGTCTGATTCTGAGGACCTTGCTGATGTAGTCAAGGGTAACACAATATCTGGACAGGATAATCATCCCGTACCTGCATCATCTTTGCAAGAGCTAGATCCTGGTGAAGAAGATTCTACTCCTGTTTCTGGGAAAAGACATATTGAAAGGTTGGACTACAAAAAACTGTATGATGAGACCTACCAAAATGCTTCATCTGATACTAGTGATGATGAAGATTGGACAGCTAGTCCTGCTTTAAGTAGGAAAAAGAAAGTCACCAGCGAAGGGCTGGCAGTGTCACCAAATGGGAAAGCCTCAATACTGGATCATATACAGAAAGGGACTGAAAGTACTCCTAGGAGAAACAATCGTCAAACTGAAGTTGAAAGTATGGATAATTCACCCAATAAATCACTTGCAGGCTCTAAGAGGGCTGGTTCAAATGGTAAAAAACGAGGATCTTCAACTTACAGAAGACTTGGGGAAGATGCAGTTAAGGTACTTTACAAAAACTTTCGAGAAAATCAGTACCCGGACCGCACCACAAAAGAAAGCATGGCACAGGAACTTGGACTTACTTTCAACCAGGTTAGAAAATGGTTTGAGAATGCTCGTTGGAGCTTTCGGAATTCTCCACGTATGGAAGCCAGGGCGAGTGAAAGTGCTTCACAGGGTGCCACTTCCAGCAGAGTTGAAAATGAGATAGTACTTGGTGATGAGAAGAGGAACTCAAAATCAGGGTCCCAGGAGGGTAATATACAGAAATCAAAATCCCAAAGCTCTAGGAAGAGGAAGCATAAGACAGTTACTGTGGAATCTGATGCAAATACAAACATTGATAGTGCGGCAACAAATCCGCTTGTCCACTCATCTAGAGTTGGTGAAGTGCAAAGAAGTCGCAAAATGAAAACAAGGAAGGGAAAATGA 3156 0.4132 MAANAIGMDASSEKMSGEMRKLICHNQNTSESLHTSDPGTYHFGSSGKNNETDSEFLDKKLSTEEANSSVDEKSPKVSDGMAENLAIQLPAEPHCDLGNSCQNGEGTCFQHNTLEQANAIGMEVPSYQMSSETRELRCHNNNTSDQLHTLDLGNTLSELSEKTNQIGSESLDNEQRVLGTRQTTSLLHEKSPSDGMTGTSVIQVPVQPQCDLDKSCQTEEGSSFQLNTLELGKIIGMDASSDHLSSKTARSTCHIHNTSEKLQTFDPRTAHFEMSEKTNQTGSEFLNNEQKVLGTGETSSLLDGKQLKVSDSMTGDSVIQLPAESQCDLDNVSQNGGGSCFQYDTLKQVSGSLSNDEFQNKHQQASQSVHNEPVERSGGNEQLDPPSQDTAKVSSPNFLQRNSRRATHARVGRKDKRTATSLKKKYMLRSSDRVLRSRMREKPKPPTSNTNLVNVDHVGENRRKGKKKKKKGRGRRVTDEFSRIRARLRYFLSQVRYKQSLIDAYSGEGWKGYSLEKLKPEKELQCAKSKILGFKLKIRDLFRHLDTLCAEGRLPQSLFDSKGEICSEDIFCAKCMSKDLTTGNDIILCDGVCDRGFHQFCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDLLGTSLSIYDSWERVFPEAAAVAGNKVDGNLGLPSDDSDDDDYNPDVTADEEVEGGKSSSDESENASASEKMEAPHSGNPYLGLPSDDSEDNDYDPSAVDHDKDAAEESSGSDFTSDSEDLADVVKGNTISGQDNHPVPASSLQELDPGEEDSTPVSGKRHIERLDYKKLYDETYQNASSDTSDDEDWTASPALSRKKKVTSEGLAVSPNGKASILDHIQKGTESTPRRNNRQTEVESMDNSPNKSLAGSKRAGSNGKKRGSSTYRRLGEDAVKVLYKNFRENQYPDRTTKESMAQELGLTFNQVRKWFENARWSFRNSPRMEARASESASQGATSSRVENEIVLGDEKRNSKSGSQEGNIQKSKSQSSRKRKHKTVTVESDANTNIDSAATNPLVHSSRVGEVQRSRKMKTRKGK 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1228 1051 CDD PHD_PRHA_like 571 623 IPR045876 -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 685 704 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 354 478 - -
Prci11g1228 1051 FunFam pathogenesis-related homeodomain protein-like 563 623 - -
Prci11g1228 1051 SUPERFAMILY FYVE/PHD zinc finger 561 629 IPR011011 -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 354 404 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 1015 1035 - -
Prci11g1228 1051 Gene3D - 897 967 - -
Prci11g1228 1051 SMART HOX_1 897 958 IPR001356 GO:0003677
Prci11g1228 1051 SUPERFAMILY Homeodomain-like 893 956 IPR009057 -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 957 974 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 426 443 - -
Prci11g1228 1051 CDD homeodomain 901 954 IPR001356 GO:0003677
Prci11g1228 1051 MobiDBLite consensus disorder prediction 808 824 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 29 53 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 406 420 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 954 1051 - -
Prci11g1228 1051 ProSiteProfiles 'Homeobox' domain profile. 894 954 IPR001356 GO:0003677
Prci11g1228 1051 SMART PHD_3 571 624 IPR001965 -
Prci11g1228 1051 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 362 1034 - -
Prci11g1228 1051 Pfam PHD-finger 571 626 IPR019787 -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 661 903 - -
Prci11g1228 1051 ProSiteProfiles Zinc finger PHD-type profile. 569 626 IPR019787 -
Prci11g1228 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 628 IPR013083 -
Prci11g1228 1051 ProSitePatterns Zinc finger PHD-type signature. 572 623 IPR019786 -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 731 745 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 669 684 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 787 806 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 871 897 - -
Prci11g1228 1051 MobiDBLite consensus disorder prediction 29 51 - -
Prci11g1228 1051 Pfam Homeodomain 902 949 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1228 Prci-Chr11 10637269 10644700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1228 369 1010 Homeobox Transcription Factor Family AT3G19510 41.534 1.04e-131 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Prci11g1228 PHD 4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1228 - - pcin:129285574 2069.66