Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1209 ATGGATACAGATTCGGCAACAATGGAGGTGCAGCAGAGAGACGTGCATCGGGTCAAGGGTCCATGGAGTCCCGAGGAGGACGAGTTGTTGCGCAAGCTCGTGCAACGGTACGGCGCTCGGAATTGGTCTGCCATAAGCAAATCAATACCCGGCAGGTCGGGGAAGTCTTGTCGGCTGCGGTGGTGCAACCAGCTCTCGCCGGACGTGGAGCACCGGTCCTTCACACCGGAGGAGGATGAGATCATCATCAAGGCCCATTCAAAGTTCGGCAACAAGTGGGCCACCATAGCGAGGCTCCTGAATGGCCGTACGGACAACGCGATCAAAAACCACTGGAACTCGACCTTGAAGCGCAAGTACTCGTCCTTGATCACCGACGAAGGCGCCGCAATCGATGGCCCTCAGGAAAAGAAACCAGCCACCGTGGAACGCGTTATGCCGATACAGTCATTGCCGTCGGGCGGCCATTGTTACAGTCCAAGCAGTCCATCAGGATCTGATGTTAGTGATTCAGGTCTTCCTGTGGGTTCATCTTCGATGGCGATTCGTCCTGTAGCGAGAAACTGCGCAATAATCTTTTCGCCTTCACAGCGGGTCGAGTCACGCCCGAGTCCAATCTTCAACTTAAACAAAGAGCCGTGCACTGATCTTAGTCTGTCTCCTCTGGGAGCCGAGTTGAACGAGACGCAGAACATTCGGAATCCTGGTTCTAGTATCGAGGCGCCAACGCAGTCTGAGAAGTTGTCATCAATGGCGACATTTGGGCCTGATTTGCTGATGGTAATGAAGGAAATGATAAGGGAGGAAGTGAGAAATTACATGGCGGGACATAATGATAGACTGTGCTCTAATCCTGACGGTGTGAGTGCGGGAGTTTCAAAGGCACAATGA 891 0.5331 MDTDSATMEVQQRDVHRVKGPWSPEEDELLRKLVQRYGARNWSAISKSIPGRSGKSCRLRWCNQLSPDVEHRSFTPEEDEIIIKAHSKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSSLITDEGAAIDGPQEKKPATVERVMPIQSLPSGGHCYSPSSPSGSDVSDSGLPVGSSSMAIRPVARNCAIIFSPSQRVESRPSPIFNLNKEPCTDLSLSPLGAELNETQNIRNPGSSIEAPTQSEKLSSMATFGPDLLMVMKEMIREEVRNYMAGHNDRLCSNPDGVSAGVSKAQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1209 296 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Prci11g1209 296 CDD SANT 73 116 IPR001005 -
Prci11g1209 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Prci11g1209 296 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Prci11g1209 296 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Prci11g1209 296 SMART sant 70 118 IPR001005 -
Prci11g1209 296 SMART sant 18 67 IPR001005 -
Prci11g1209 296 MobiDBLite consensus disorder prediction 151 175 - -
Prci11g1209 296 MobiDBLite consensus disorder prediction 154 175 - -
Prci11g1209 296 FunFam Transcription factor MYB44 73 119 - -
Prci11g1209 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Prci11g1209 296 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Prci11g1209 296 PANTHER MYB PROTEIN-RELATED 19 205 - -
Prci11g1209 296 MobiDBLite consensus disorder prediction 1 21 - -
Prci11g1209 296 Gene3D - 73 119 - -
Prci11g1209 296 MobiDBLite consensus disorder prediction 7 21 - -
Prci11g1209 296 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Prci11g1209 296 FunFam MYB transcription factor 19 70 - -
Prci11g1209 296 CDD SANT 21 63 IPR001005 -
Prci11g1209 296 Gene3D - 18 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1209 Prci-Chr11 10534713 10536083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1209 17 275 MYB Transcription Factor Family AT5G67300 48.421 6.61e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g1209 Myb_DNA-binding 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1209 K09422 - qsa:O6P43_031073 301.982