Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1160 ATGTCCTACGACGCTTCCTCCTCCACCTCTCCCCGCCCGCCTACCTCACTCTCTCCCGACCAAGAACTCTCCGTCATCGTCGCCGCACTCACCAACGTTGTCCTCGGCTCCACCCCCGATCTCACCCACCAATTCAACTTGCCCCATATCGCCGCCGCCGCCTCCGCCGAGAACACCGTCCACCATGCCAACAACACCGCGCCAGACCTTACTGTCAGCACCAGCTGCCCTGATTTCGTGTTCGCCTCCTGCTCCGGCTGCAAGCTTGTACCAGAAGAGAAGGCCAAAAATGTCGGCAACAGACAGCCGCAGAAGAGGGCGAAGAAGCAGTACAGAGGAGTGAGGCAGAGGCCCTGGGGGAAATGGGCGGCCGAGATTCGAGACCCGAGAAGAGCTACCCGGGTCTGGCTGGGAACGTTCAAGACGGCGGAGGAAGCAGCTCGCGCGTATGATAAAGCGGCCATCGAGTTCCGTGGGCCCCGCGCCAAGCTGAACTTTCCTTTCTGTGATGACTCGCTGCTGAATTTGCATGACAGTCAGCTGCCGGAAGCTCCTCCGGTGACGGCGCCGCCAGGGACAGCGGGGTCGGAGTCGGAGCAGGGGAATACCGAGAATCCGAGCAGCGGAACGGATGCAATGATGTTTGAGGATGGTGAATTCTGGGATAGGATTGGAAAAGCAGATTTGGAAAAGTGGATGATGGATTTTGCCGCCGGAGACTCTTCGGACTCCGCTCCCGGAACTACTCAGAGCTGGTGA 759 0.5955 MSYDASSSTSPRPPTSLSPDQELSVIVAALTNVVLGSTPDLTHQFNLPHIAAAASAENTVHHANNTAPDLTVSTSCPDFVFASCSGCKLVPEEKAKNVGNRQPQKRAKKQYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEEAARAYDKAAIEFRGPRAKLNFPFCDDSLLNLHDSQLPEAPPVTAPPGTAGSESEQGNTENPSSGTDAMMFEDGEFWDRIGKADLEKWMMDFAAGDSSDSAPGTTQSW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1160 252 PANTHER DNA-BINDING DOMAIN 69 197 IPR044808 GO:0003700|GO:0009873
Prci11g1160 252 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Prci11g1160 252 MobiDBLite consensus disorder prediction 193 210 - -
Prci11g1160 252 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Prci11g1160 252 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Prci11g1160 252 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Prci11g1160 252 MobiDBLite consensus disorder prediction 177 217 - -
Prci11g1160 252 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Prci11g1160 252 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Prci11g1160 252 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Prci11g1160 252 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
Prci11g1160 252 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1160 Prci-Chr11 10156375 10157451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1160 17 170 AP2-EREBP Transcription Factor Family AT4G34410 45.902 2.74e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci11g1160 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1160 - - pcin:129285371 501.13