Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1145 ATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAGCACCAGCAGCAGTGGAGCACGCAGCAACCGCATCACTATCAGCAGCAATGGATGGCTATGCAGTACCCTGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCCCAACATTACATGCCTTATGTCCACCATTATATGCCTCCTCACCAGCAGCAGCTCAAGCCCCAGGCAGCCTTTCAGCAGCTGCAGCAACAGAAGCAAGGGTCATCCGATGAGATCAGGACGGTATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTGCATAACTGTTTTGCTCACACTGGCGAGGTTGTATCAGCCAAGGTTATACGAAATAAGCAAACTGGCCAGTCAGAAGGGTATGGATTTGTTGAGTTTTATTCGCGTGCAACAGCTGAAAAAGTTTTGAACGGCTACAATGGTACCATGATGCCAAATACTGATCAGCCCTTTCGTCTAAATTGGGCTACTTTCGGCGCGGGTGATAGGAGATCTGAAGCTAGTTCTGATCTGTCCATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTTCATGAAACCTTTGCTAGCAGATATGCATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAATACTGGCCGATCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAGCTGAGAGGTCTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGGCCCATGCGTACAGGTGTTGCAACCCCAAAGAAGTCCCACGGGTATCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCGTCTAATGGTGCTAACACACAAGGTTCCCAGCCTGAAGGGGACTCAAATAACACGACTATTTTTGTTGGCGGGCTTGATTCTGATGTTAGAGATGATGATCTTAGACAACCATTTTTGCAATTTGGAGAGGTTGTCTCAGTCAAAATACCTGTAGGTAAAGGTTGTGGCTTTGTTCAATTTTCCGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTAAACGGCACAGTAATTGGGAAGCAGACCGTACGTCTTTCTTGGGGTCGCAGCCCTGGAAATAAGCATTGGAGGACAGATTCCAGTGGAGGAGGTCACTATGGAAGCCAGGGGTCTGCCATGCGACAAAACCAGGATGTTAGCATGAACGTTGCTGCTGCAGTCCAAGGGGCTTCCTGA 1251 0.4748 MAQPTNTADLNQHQHQQQWSTQQPHHYQQQWMAMQYPAAAMAMMQQQMMMYPQHYMPYVHHYMPPHQQQLKPQAAFQQLQQQKQGSSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLNGYNGTMMPNTDQPFRLNWATFGAGDRRSEASSDLSIFVGDLAVDVTDAMLHETFASRYASVKGAKVVIDSNTGRSKGYGFVRFGDEAERSRAMTEMNGCYCSNRPMRTGVATPKKSHGYQQQYSSQAVVLANGHSSNGANTQGSQPEGDSNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTDSSGGGHYGSQGSAMRQNQDVSMNVAAAVQGAS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1145 416 Gene3D - 280 407 IPR012677 -
Prci11g1145 416 SUPERFAMILY RNA-binding domain, RBD 176 284 IPR035979 GO:0003676
Prci11g1145 416 SUPERFAMILY RNA-binding domain, RBD 293 399 IPR035979 GO:0003676
Prci11g1145 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Prci11g1145 416 SUPERFAMILY RNA-binding domain, RBD 62 173 IPR035979 GO:0003676
Prci11g1145 416 CDD RRM2_SECp43_like 183 262 - -
Prci11g1145 416 CDD RRM1_SECp43_like 92 172 - -
Prci11g1145 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Prci11g1145 416 FunFam Polyadenylate-binding protein RBP47 285 401 - -
Prci11g1145 416 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Prci11g1145 416 Gene3D - 173 277 IPR012677 -
Prci11g1145 416 MobiDBLite consensus disorder prediction 283 308 - -
Prci11g1145 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 368 IPR000504 GO:0003723
Prci11g1145 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Prci11g1145 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Prci11g1145 416 Gene3D - 90 170 IPR012677 -
Prci11g1145 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 80 379 - -
Prci11g1145 416 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Prci11g1145 416 MobiDBLite consensus disorder prediction 283 309 - -
Prci11g1145 416 MobiDBLite consensus disorder prediction 1 23 - -
Prci11g1145 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Prci11g1145 416 SMART rrm1_1 185 259 IPR000504 GO:0003723
Prci11g1145 416 SMART rrm1_1 92 167 IPR000504 GO:0003723
Prci11g1145 416 SMART rrm1_1 304 371 IPR000504 GO:0003723
Prci11g1145 416 MobiDBLite consensus disorder prediction 374 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1145 Prci-Chr11 10051421 10056571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1145 90 372 Eukaryotic Initiation Factors Gene Family AT2G23350 29.110 1.28e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1145 - - gmx:100798089 580.482