Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1107 ATGCCTCGACCTTGTTTTCACAAGCTGATTTGTCCCTCCACTCTCCAATCCCGGCAGCTGACTATTCCAGATAATTTTCTGAGAAAATTTGGGTGTGAGCTTTCTTCTGTGGCTACCCTTACTGTTCCTGATGGCAGTGTGTGGCGAGTAGGCTTACAAAAATTGGGCAACAAATTTTGGTTCCTTGATGGCTGGCAGGAATTTGTTCAACGCTACTCCATTGGTGTTGGTTACCTGTTGGTATTCAGATATGAAGGGAAATCATCATTCAATGTTCATATTTTCAATTTGGCTACTTGCGAGATAAATTACCAATCAAACGCACGAAGCAGTAATGAAGGGCCTTTCTTTGCAAATCAACATCTTAATTTTGATGATATTGAAGATGAAGACTCCATTGCATTCTTAGATTCATCGCCTTCATCCCTTACTCCTGATGCAATGCAGAACAAGGCTTTTCCTGGAGCTCCAGCATTACAGAATTTGTTCCATGGATCTAAACTCAACTCCATAAACTGGGGAGATGGGGGGAATTCCTTTTCTCCTAAAGGTGCCAATTCTCAAGACAATCAGTCAAGCAGAAATATAGGTGTTCAGTTTAATGCAGTTGAATTCAAAAAGTCTACTGAAGAGCTAAAGTTGCGTTTCTCTAATGAGGAAATGCAAAGAGTTAAAAAAACTATAAGAAAGAAGCGGAAAATGGATCCTAATGGGCAAGCATCCTCAGCTCAACATGAAGAAGAGGTGGAAATACGCTATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAAAGGGCAATTAATTCAGCAAAAGCATTTGAACCGGATAATCCTTTCTGTCGGGTTGTCCTGCGACCCTCCTATTTGTATAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGGGGTTTCAGGATTCATTAAACTCCAAATCTCTGATGGAAAACAGTGGCCTGTTCGCTGCCTTTACAGAGGAGGGAGAGCAAAGTTAAGCCAAGGGTGGTTTGAATTTTCGCTGGAAAATAATTTAGGCGAAGGCGACGTCTGTGTTTTTGAACTTCTTAGAATGAAGGAAGTAGTGTTGAAAGTTACTATATTTCGTGTCACTGAGGATGCAGGAGTGATGAGCCCCCCTCCTATGCATCAACACCGAAACGTGAGCCCAACTAAACTGTTGAATGCTCCTATGCAGCAAAACATCATCCCAGCCAAACTGATTAGGAACTAG 1269 0.4137 MPRPCFHKLICPSTLQSRQLTIPDNFLRKFGCELSSVATLTVPDGSVWRVGLQKLGNKFWFLDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATCEINYQSNARSSNEGPFFANQHLNFDDIEDEDSIAFLDSSPSSLTPDAMQNKAFPGAPALQNLFHGSKLNSINWGDGGNSFSPKGANSQDNQSSRNIGVQFNAVEFKKSTEELKLRFSNEEMQRVKKTIRKKRKMDPNGQASSAQHEEEVEIRYRFYESASARKRTVTAEERERAINSAKAFEPDNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISDGKQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLKVTIFRVTEDAGVMSPPPMHQHRNVSPTKLLNAPMQQNIIPAKLIRN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1107 422 SUPERFAMILY DNA-binding pseudobarrel domain 281 382 IPR015300 -
Prci11g1107 422 Gene3D - 265 385 IPR015300 -
Prci11g1107 422 MobiDBLite consensus disorder prediction 174 193 - -
Prci11g1107 422 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Prci11g1107 422 CDD B3_DNA 286 381 IPR003340 GO:0003677
Prci11g1107 422 CDD B3_DNA 4 96 IPR003340 GO:0003677
Prci11g1107 422 PANTHER B3 DOMAIN-CONTAINING 3 371 - -
Prci11g1107 422 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Prci11g1107 422 Coils Coil 421 422 - -
Prci11g1107 422 MobiDBLite consensus disorder prediction 227 246 - -
Prci11g1107 422 Gene3D - 1 100 IPR015300 -
Prci11g1107 422 SMART B3_2 6 98 IPR003340 GO:0003677
Prci11g1107 422 SMART B3_2 288 383 IPR003340 GO:0003677
Prci11g1107 422 ProSiteProfiles B3 DNA-binding domain profile. 288 383 IPR003340 GO:0003677
Prci11g1107 422 Pfam B3 DNA binding domain 291 382 IPR003340 GO:0003677
Prci11g1107 422 Pfam B3 DNA binding domain 7 95 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1107 Prci-Chr11 9719987 9722968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1107 1 387 B3 DNA Binding Superfamily AT3G18990 53.418 1.84e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci11g1107 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1107 - - gmx:100813285 627.476