Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1047 ATGCTTTCGTGCCAGAAATACAAGCTTCACTCTCCGCGCTCTCTCCTTCTCCAATCCCTCACCACCCCAATTTCCACCATCGTTAATTGCCAGAATCCACATAGCCCGGATTCCCAGAACCTCATTCTTCGCAAGCAGAACTCCAAATCCAGCGCCTTTCTCCTTCACCAACTTTCTCTTGACCAAGAAAACCATCATTCTCAGCACTTCAACCTCAAATCCAATGACCTTCAACACAACATGCCCGATGAAGAAAAGATTAAGCTGTTAGAGCTTTCTCTGGTAAGGAAAAGGACCCCTCAGTTTCCCGGGTCCATCTATGTTCAATCTCCCAGTGATCCCGATGTGGGTTCTTCTTTGCCGCCTCTGCGAACTCTGTTTAGAGAAAAAGTTGAAGGTGAAGGTGCAGATGAGGAGGAGATGATAATGCGTGCGATTGAGATTCGAAGGAAGGTGACGCGAGAGATTTTTATACAAGCTATGCGAAAGGGCAAGTTTGGAATCACGTATGCTACCAATTTGGTCAATCGATTGACTGGTTTTATCGATTATATTATGATTGAAGCTGCTTCGATGAAAAGGATACCTGAGTATTCGCATTCCACGTTCAATTTACGCGCCAAAACTGTTATAGACGACTCACAAGTTGTGCATCTTATCAGATGGTTGAAGCATAATGCACTGTCATATCATCGGATATCAAAGCTCATTTTGATGTCAAGAGGAAACCTTGAGTCTATAAGACGCCTTGCTGAGTGGTTGAAGTCAGTACACGTGAAAGGAGAATTTCTTGGGGTTACACTTGTGAATGCTGGAGATAATGTTCTGGAACGCAGCGATGAGGAGCTGGATGAGATTGTTGAGTATTTAGAGAGCAAGGGAGTCAGGAGGGATTGGATGGGTTATGTCATAAGTCGATGTCCTCAATTGTTATCTTACAGCATGGAAGAAGTGAAGACTCGTGTGAAATTCTACATAGATATGGGTTTAAATGATCATGATTTTGGCACGATGGTTTTTGATTATCCTAAAGTTCTTGGTCACTTTACTCTAGAAGAAATGAATCAAAAGGTTAGTTACTTAAAGGAGTTTGGGCTCAAAACTGAGGATGTTGGTAGATTGCTAGCATTTAAGCCACAATTGATGGGATGTAGCATTGAAGAAGGATGGAAGCCTCTTGCTAAGTATTTGTATTATTTTGGGATTACCCGAGATGGTATGAGGAGAATGCTTATGATCAAACCAATGGTCTTTTGTATCGATTTGCAGACAACTATTGTGCCTAAGGTAAAGTTTTTTCAAGATATAGGGATTCGAGATGATGCAATTGGAAACATGCTTGTGAAGTTTCCTACTCTGCTCACGTACAGCCTCTACAAGAAGATTAGGCCAGTGGTCATATTCTTGATGACCAAAGCTGGGGTCAGCGATAAAGATATTGCAAAGGCTATTGCTCTGGGACCAGAGCTCTTGGGATGCAGCATAACGCATAAGCTTGAAGTGAATGTAAAATATTATCTGTCACTGGGCATACGTTTTAAGCAATTGGGTGAGATGATTGCGGATTTCCCGATGCTGCTCAGATACAACATAGATATCCTTCGTCCCAAGTATAGTTATTTGCGACGAACCATGGTCCGGCCTTTGGAAGATCTCATTGAGTTTCCAAGGTTTTTCAGTTATTCTCTCAATGGCCGAATTATTCCAAGGCACAAGGTTCTGGTGGAGAATCGGATTAATTTGAAGCTGCGGTATATGTTAGCCTGTTCTGATGAAGAATTCAGAAAATTGGTAGACTCTAAAATTAGAAAGCGACACATGCTGCCATCTGCAGGCACGGGTGCTGATATTACAGACCCCCAGACAAATTGA 1872 0.4236 MLSCQKYKLHSPRSLLLQSLTTPISTIVNCQNPHSPDSQNLILRKQNSKSSAFLLHQLSLDQENHHSQHFNLKSNDLQHNMPDEEKIKLLELSLVRKRTPQFPGSIYVQSPSDPDVGSSLPPLRTLFREKVEGEGADEEEMIMRAIEIRRKVTREIFIQAMRKGKFGITYATNLVNRLTGFIDYIMIEAASMKRIPEYSHSTFNLRAKTVIDDSQVVHLIRWLKHNALSYHRISKLILMSRGNLESIRRLAEWLKSVHVKGEFLGVTLVNAGDNVLERSDEELDEIVEYLESKGVRRDWMGYVISRCPQLLSYSMEEVKTRVKFYIDMGLNDHDFGTMVFDYPKVLGHFTLEEMNQKVSYLKEFGLKTEDVGRLLAFKPQLMGCSIEEGWKPLAKYLYYFGITRDGMRRMLMIKPMVFCIDLQTTIVPKVKFFQDIGIRDDAIGNMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVSDKDIAKAIALGPELLGCSITHKLEVNVKYYLSLGIRFKQLGEMIADFPMLLRYNIDILRPKYSYLRRTMVRPLEDLIEFPRFFSYSLNGRIIPRHKVLVENRINLKLRYMLACSDEEFRKLVDSKIRKRHMLPSAGTGADITDPQTN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1047 623 PANTHER CGI-12 PROTEIN-RELATED 274 369 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 408 439 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 266 296 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 549 580 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 517 547 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 301 331 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 372 403 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 336 367 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 444 476 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 SMART mt_12 481 512 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 FunFam BnaA09g42960D protein 374 605 - -
Prci11g1047 623 Pfam mTERF 287 594 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 Pfam mTERF 254 422 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 Pfam mTERF 246 327 IPR003690 GO:0003690|GO:0006355
Prci11g1047 623 Gene3D Transcription termination factor 3, mitochondrial 377 601 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1047 Prci-Chr11 9298243 9302554 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Prci11g1047 mTERF 1.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1047 K15031 - qsa:O6P43_001902 908.286