Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1041 ATGTTGCGTTGTCTCAATTCCGACTTGACGGTGTTGGAACGGCAGAGGATGAGGTTGAAGTGGCAACAAGAGCAACATCAGCTTCAATCTCACCAAAGCCAGAGCTTCTATGGCGATTCTGCGCTCGGTGAGGTGGTGGCCCGCTCCATCAAGCCTGAACTGGGCCACCTCCGCCTTCCCGGTTTCGGCTTGGAACGGAGTTCTGCAATTTCGACGACTTCCATGGCAGCAGTTGAAGAACCCAGAGGCAGAGACTCTGTTTCAGAGAAGGAAAAGACGAGCTCTGCATGCGGGAAACACAGCTTCAAGAAGAGAAAATCCGATAGGGCTGCTAGCTCCAAGGTTGTTGCAGAAAGTGAAAGCAGAGAGAAGAAGATGAAAGGAAGCGGAGAGGAAGGGAAATCCAAAATAACAGAGCAGAATAGCAGCAAGAACACCACTACCAACAACAAAGAAATATGTATGGGTTCCTCAAAGGGAAATTCGAAGGCGTCCGAGGTTCAAAAGACAGATTACATCCATGTCCGAGCACGTCGTGGCCAAGCCACTGACAGCCATAGCCTAGCAGAAAGAGTTAGAAGGGAAAAGATCAGCGAGCGAATGAAGTATTTGCAGGATTTAGTGCCTGGTTGCAACAAAATCACAGGAAAAGCTGGAATGCTTGACGAGATCATCAACTATGTTCAATCTCTTCAACGCCAAGTTGAGTTCTTGTCCATGAAATTAGCTGCTGTAAACCCAGCACTTGACTTCAACCTTGATGATGTGTTCTCTAAAGAGGTTTTTAGTACTTGTGGTCCAAGTTTTGCAGCGATTGGGATGGGATCAGATATGAACAATCCAGCTTATCTTCAGTTCAACTCAGGGCAGCAATTTCCTGCTTCAATTCCGGAAACGTTCCTTGACTCCTGCTGTTTTCCTCAATTTCTACCATCCTCTACTTACGAGTCTAATCTTCATAATACAATCAATCTGGGTTTTGATCAAGCACAAGCATCATCATCATCCTTTCTTTCCCGGCCATTCATAGGTGTAATTGAAGCTAGCAACCCAAAGATGGAGATGTAG 1068 0.4625 MLRCLNSDLTVLERQRMRLKWQQEQHQLQSHQSQSFYGDSALGEVVARSIKPELGHLRLPGFGLERSSAISTTSMAAVEEPRGRDSVSEKEKTSSACGKHSFKKRKSDRAASSKVVAESESREKKMKGSGEEGKSKITEQNSSKNTTTNNKEICMGSSKGNSKASEVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPALDFNLDDVFSKEVFSTCGPSFAAIGMGSDMNNPAYLQFNSGQQFPASIPETFLDSCCFPQFLPSSTYESNLHNTINLGFDQAQASSSSFLSRPFIGVIEASNPKMEM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1041 355 SMART finulus 187 237 IPR011598 GO:0046983
Prci11g1041 355 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 86 291 IPR024097 GO:0006355
Prci11g1041 355 MobiDBLite consensus disorder prediction 139 167 - -
Prci11g1041 355 Gene3D - 178 251 IPR036638 GO:0046983
Prci11g1041 355 MobiDBLite consensus disorder prediction 82 98 - -
Prci11g1041 355 Pfam Helix-loop-helix DNA-binding domain 185 232 IPR011598 GO:0046983
Prci11g1041 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 249 IPR036638 GO:0046983
Prci11g1041 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 231 IPR011598 GO:0046983
Prci11g1041 355 MobiDBLite consensus disorder prediction 72 167 - -
Prci11g1041 355 FunFam Basic helix-loop-helix transcription factor 178 250 - -
Prci11g1041 355 MobiDBLite consensus disorder prediction 108 138 - -
Prci11g1041 355 CDD bHLH_AtBPE_like 171 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1041 Prci-Chr11 9236065 9238994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1041 8 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 43.143 2.08e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci11g1041 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1041 - - pcin:129286940 648.277