Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1007 ATGCAAACATCAAACATTTTTCCAGAGAAGTTATTGTCGTTGATAAGCTATATGAAGTGGAAAGTAGAAACTAGATTTAATTCAGAGAAACACAAACGATTAAATGTTGTAGATTATAGCAATCCATATGCAATTGCGAACTTGCTTGATGACCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTACCTTGTAGCTCAAAAAATGCAGACATTGAGCCCTCTATTTGCAAAAGATCCTGCACTTCTACAGTTTGTGAAAGTGGGAATGAATCGCAATGAAGGAGCTGCTAAGAAAATCATAGATTTGGAGCATAATCTCGTGAGAAAGGCTGCTCCAAAGGCGTCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGCCATTTCAGGAAGTCATACTGCCAAAACCTGTGGTCCTGTCTACTACAAGGGACATGGTTGAGTACCATGGTCCCAATGCATATCAACCTCCTATTGGGTGTCATGCTGGAAGTCTAGATGTAAAACCTGAGCTTTTTCTCGTTGACAAAGACAACATTAGAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACGATCCACAGGCTGATACAAAGGATGATGGCCTAGAAGATATCTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAGGATGTTGCTATGGATTCTCCATATGATGAAGTTGAAAAGGGAAGTGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGCCGTGTTTGTGGGGTTATCGACAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGCACGAGAACTTACATGGCGGATTCATGGAATGCCAAAGAGAGAACAGCGCCTGAGGTATCAGGACTTACATTTGGTGAAGATGGTCTGGTGATAACTGAAATCTCTGCGCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGAAACCTTGCTGGTGACAATCCTGGTGGCTGCATCCTGGCCCATGCTCCTGGTTCTGGGAAGACTTTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCTAATGCTCGACCCCTTGTGGTTCTTCCTAAGGGTATATTGGCTACTTGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATCCCACTCTTTGATTTTTACTCTGCTAAGGCAGACAGTCGGTCTCAGCAACTGGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAGCAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCAATGTATCAGCGTCTTGCCAGGAGGTATTGCTTAAGGCTCCTTCTATTCTAATTTTAGATGAGGGGCACACACCAAGGAATGACAATACTGACATAGTTCAATCCCTTACTAAGGTTCAAACTCCTAGGAAAGTTGTATTGTCAGGAACCCTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACATTGTTCGTCCCCCAAATTTTATACGTTCAAAGACATCTCGACCTATTGTCAGGCGAATTAAGAGTAGAGTACATGTACCAGGCGTAAAGGATTTCTGTGACTTGGTAGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATCTGCGGGAGATGACAAGCCAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTTGCAGTTGTACTCAATCTCACTCCCCGACAGAAGCATGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCAGCTGTATCTGATCACATGATGGATGAGAAAATAGAGAGCCTAGATGTGGACGATGGGGTAAAGTCGAAATTCTTTCTTAAAATGCTAAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTCTGAAATATTTAGAAAGATTAACTGTGAAAAGGAAGGGATGGAGTCCTGGAAAAGAAGTATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCACCGGATGCTAAAGTGTTCTTCGGCTCAATCAAGGCATGTGGGGAAGGCATATCGCTGGTTGGGGCATCACGCATAATTATTTTGGATGTTCATCTTAATCCATCTGTTACACGCCAAGCAATTGGCCGTGCTTTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGACACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTCGAATGGAATGAGTATTGTGGTTTCCGTGATTTTGAAGTCGAGACTATTGATGTGGAACAATGTGGTGATTTCTTTCTGCAAAGTCCATTGATAAGGGATGATGTAAAAATTCTGCATAGAAGGCCATGA 2598 0.4042 MQTSNIFPEKLLSLISYMKWKVETRFNSEKHKRLNVVDYSNPYAIANLLDDLNHGKFGSVTKDIEYLVAQKMQTLSPLFAKDPALLQFVKVGMNRNEGAAKKIIDLEHNLVRKAAPKASSTVVIIDSDEEDDRDKKPCLPFQEVILPKPVVLSTTRDMVEYHGPNAYQPPIGCHAGSLDVKPELFLVDKDNIRKDKGAFIGVQEEDDPQADTKDDGLEDIWREMSMAIECSKDVAMDSPYDEVEKGSGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNAKERTAPEVSGLTFGEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLFDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTSNVSASCQEVLLKAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFIRSKTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHPKLKPMAENCAENSAVSDHMMDEKIESLDVDDGVKSKFFLKMLSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEVFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETIDVEQCGDFFLQSPLIRDDVKILHRRP 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1007 865 Gene3D - 308 545 IPR038718 -
Prci11g1007 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 826 IPR027417 -
Prci11g1007 865 SMART ultradead3 327 542 IPR014001 -
Prci11g1007 865 Pfam Helicase conserved C-terminal domain 677 787 IPR001650 -
Prci11g1007 865 Pfam SNF2-related domain 351 615 IPR000330 GO:0005524|GO:0140658
Prci11g1007 865 Gene3D - 595 839 IPR027417 -
Prci11g1007 865 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 204 862 IPR044567 GO:0080188
Prci11g1007 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 526 IPR027417 -
Prci11g1007 865 CDD SF2_C_SNF 659 799 - -
Prci11g1007 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 524 IPR014001 -
Prci11g1007 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 674 842 IPR001650 -
Prci11g1007 865 SMART helicmild6 700 788 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1007 Prci-Chr11 9020489 9026577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1007 685 806 RAD5 or RAD16-like Gene Family AT5G43530 36.066 2.86e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci11g1007 SNF2_N 4.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1007 K10875 - gmx:100780454 1229.54