Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1006 ATGCAAACATCAAACATTTTTCCAGAGAAGTTATTGTCGTTGATAAGCTATATGAAGTGGAAAGTAGAAACTAGATTTAATTCAGAGAAACACAAACGATTAAATGTTGTAGATTATAGCAATCCATATGCAATTGCGAACTTGCTTGATGACCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTACCTTGTAGCTCAAAAAATGCAGACATTGAGCCCTCTATTTGCAAAAGATCCTGCACTTCTACAGTTTGTGAAAGTGGGAATGAATCGCAATGAAGGAGCTGCTAAGAAAATCATAGATTTGGAGCATAATCTCGTGAGAAAGGCTGCTCCAAAGGCGTCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGCCATTTCAGGAAGTCATACTGCCAAAACCTGTGGTCCTGTCTACTACAAGGGACATGGAGTACCATGGTCCCAATGCATATCAACCTCCTATTGGGTGTCATGCTGGAAGTCTAGATGTAAAACCTGAGCTTTTTCTCGTTGACAAAGACAACATTAGAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACGATCCACAGGCTGATACAAAGGATGATGGCCTAGAAGATATCTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAGGATGTTGCTATGGATTCTCCATATGATGAAGTTGAAAAGGGAAGTGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGCCGTGTTTGTGGGGTTATCGACAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGCACGAGAACTTACATGGCGGATTCATGGAATGCCAAAGAGAGAACAGCGCCTGAGGTATCAGGACTTACATTTGGTGAAGATGGTCTGGTGATAACTGAAATCTCTGCGCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGAAACCTTGCTGGTGACAATCCTGGTGGCTGCATCCTGGCCCATGCTCCTGGTTCTGGGAAGACTTTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCTAATGCTCGACCCCTTGTGGTTCTTCCTAAGGGTATATTGGCTACTTGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATCCCACTCTTTGATTTTTACTCTGCTAAGGCAGACAGTCGGTCTCAGCAACTGGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAGCAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCAATGTATCAGCGTCTTGCCAGGAGGTATTGCTTAAGGCTCCTTCTATTCTAATTTTAGATGAGGGGCACACACCAAGGAATGACAATACTGACATAGTTCAATCCCTTACTAAGGTTCAAACTCCTAGGAAAGTTGTATTGTCAGGAACCCTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACATTGTTCGTCCCCCAAATTTTATACGTTCAAAGACATCTCGACCTATTGTCAGGCGAATTAAGAGTAGAGTACATGTACCAGGCGTAAAGGATTTCTGTGACTTGGTAGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATCTGCGGGAGATGACAAGCCAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTTGCAGTTGTACTCAATCTCACTCCCCGACAGAAGCATGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCAGCTGTATCTGATCACATGATGGATGAGAAAATAGAGAGCCTAGATGTGGACGATGGGGTAAAGTCGAAATTCTTTCTTAAAATGCTAAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTCTGAAATATTTAGAAAGATTAACTGTGAAAAGGAAGGGATGGAGTCCTGGAAAAGAAGTATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCACCGGATGCTAAAGTGTTCTTCGGCTCAATCAAGGCATGTGGGGAAGGCATATCGCTGGTTGGGGCATCACGCATAATTATTTTGGATGTTCATCTTAATCCATCTGTTACACGCCAAGCAATTGGCCGTGCTTTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGACACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTCGAATGGAATGAGTATTGTGGTTTCCGTGATTTTGAAGTCGAGACTATTGATGTGGAACAATGTGGTGATTTCTTTCTGCAAAGTCCATTGATAAGGGATGATGTAAAAATTCTGCATAGAAGGCCATGA 2595 0.4042 MQTSNIFPEKLLSLISYMKWKVETRFNSEKHKRLNVVDYSNPYAIANLLDDLNHGKFGSVTKDIEYLVAQKMQTLSPLFAKDPALLQFVKVGMNRNEGAAKKIIDLEHNLVRKAAPKASSTVVIIDSDEEDDRDKKPCLPFQEVILPKPVVLSTTRDMEYHGPNAYQPPIGCHAGSLDVKPELFLVDKDNIRKDKGAFIGVQEEDDPQADTKDDGLEDIWREMSMAIECSKDVAMDSPYDEVEKGSGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNAKERTAPEVSGLTFGEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLFDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTSNVSASCQEVLLKAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFIRSKTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHPKLKPMAENCAENSAVSDHMMDEKIESLDVDDGVKSKFFLKMLSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEVFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETIDVEQCGDFFLQSPLIRDDVKILHRRP 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1006 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 344 523 IPR014001 -
Prci11g1006 864 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 203 861 IPR044567 GO:0080188
Prci11g1006 864 SMART ultradead3 326 541 IPR014001 -
Prci11g1006 864 Pfam Helicase conserved C-terminal domain 676 786 IPR001650 -
Prci11g1006 864 CDD SF2_C_SNF 658 798 - -
Prci11g1006 864 Gene3D - 594 838 IPR027417 -
Prci11g1006 864 SMART helicmild6 699 787 IPR001650 -
Prci11g1006 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 825 IPR027417 -
Prci11g1006 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 673 841 IPR001650 -
Prci11g1006 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 525 IPR027417 -
Prci11g1006 864 Pfam SNF2-related domain 350 614 IPR000330 GO:0005524|GO:0140658
Prci11g1006 864 Gene3D - 307 544 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1006 Prci-Chr11 9020489 9026577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1006 684 805 RAD5 or RAD16-like Gene Family AT5G43530 36.066 2.93e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci11g1006 SNF2_N 4.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1006 K10875 - gmx:100780454 1226.08