Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1005 ATGGAGTCGCCAGCAGTGGGTTTGCTACCGGCTAAACGCCCTGCTAATGGATTTAATTCAGAGAAACACAAACGATTAAATGTTGTAGATTATAGCAATCCATATGCAATTGCGAACTTGCTTGATGACCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGATATAGAGTACCTTGTAGCTCAAAAAATGCAGACATTGAGCCCTCTATTTGCAAAAGATCCTGCACTTCTACAGTTTGTGAAAGTGGGAATGAATCGCAATGAAGGAGCTGCTAAGAAAATCATAGATTTGGAGCATAATCTCGTGAGAAAGGCTGCTCCAAAGGCGTCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGCCATTTCAGGAAGTCATACTGCCAAAACCTGTGGTCCTGTCTACTACAAGGGACATGGTTGAGTACCATGGTCCCAATGCATATCAACCTCCTATTGGGTGTCATGCTGGAAGTCTAGATGTAAAACCTGAGCTTTTTCTCGTTGACAAAGACAACATTAGAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGAAGACGATCCACAGGCTGATACAAAGGATGATGGCCTAGAAGATATCTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAGGATGTTGCTATGGATTCTCCATATGATGAAGTTGAAAAGGGAAGTGGTGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGCCGTGTTTGTGGGGTTATCGACAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGCACGAGAACTTACATGGCGGATTCATGGAATGCCAAAGAGAGAACAGCGCCTGAGGTATCAGGACTTACATTTGGTGAAGATGGTCTGGTGATAACTGAAATCTCTGCGCACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAAGGATTTAATTTTCTTGTCCGAAACCTTGCTGGTGACAATCCTGGTGGCTGCATCCTGGCCCATGCTCCTGGTTCTGGGAAGACTTTCATGATAATTAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCTAATGCTCGACCCCTTGTGGTTCTTCCTAAGGGTATATTGGCTACTTGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATCCCACTCTTTGATTTTTACTCTGCTAAGGCAGACAGTCGGTCTCAGCAACTGGAAGTTTTAAAACAGTGGGTGGAGCAGAAGAGTATTCTTTTCCTAGGATACAAGCAATTCTCTTCAATTGTCTGTGATACTGGAACTAGCAATGTATCAGCGTCTTGCCAGGAGGTATTGCTTAAGGCTCCTTCTATTCTAATTTTAGATGAGGGGCACACACCAAGGAATGACAATACTGACATAGTTCAATCCCTTACTAAGGTTCAAACTCCTAGGAAAGTTGTATTGTCAGGAACCCTATATCAAAATCATGTCAAAGAGGTGTTTAACATTTTAAACATTGTTCGTCCCCCAAATTTTATACGTTCAAAGACATCTCGACCTATTGTCAGGCGAATTAAGAGTAGAGTACATGTACCAGGCGTAAAGGATTTCTGTGACTTGGTAGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATCTGCGGGAGATGACAAGCCAGGTACTTCATTACTACAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTTGTAGATTTTGCAGTTGTACTCAATCTCACTCCCCGACAGAAGCATGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCTGTTTATCTTCACCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCAGCTGTATCTGATCACATGATGGATGAGAAAATAGAGAGCCTAGATGTGGACGATGGGGTAAAGTCGAAATTCTTTCTTAAAATGCTAAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTTTTTAGCCAATATCTCTTACCTCTGAAATATTTAGAAAGATTAACTGTGAAAAGGAAGGGATGGAGTCCTGGAAAAGAAGTATTTGTTATATCAGGTGAATCAAGCTCTGAACAAAGAGAATGGTCCATGGAGCGGTTTAACAATTCACCGGATGCTAAAGTGTTCTTCGGCTCAATCAAGGCATGTGGGGAAGGCATATCGCTGGTTGGGGCATCACGCATAATTATTTTGGATGTTCATCTTAATCCATCTGTTACACGCCAAGCAATTGGCCGTGCTTTCCGACCAGGTCAGACAAAGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGACACTTGTTTCAAGAAGGAATTAATATCAAAAATGTGGTTCGAATGGAATGAGTATTGTGGTTTCCGTGATTTTGAAGTCGAGACTATTGATGTGGAACAATGTGGTGATTTCTTTCTGCAAAGTCCATTGATAAGGGATGATGTAAAAATTCTGCATAGAAGGCCATGA 2574 0.4099 MESPAVGLLPAKRPANGFNSEKHKRLNVVDYSNPYAIANLLDDLNHGKFGSVTKDIEYLVAQKMQTLSPLFAKDPALLQFVKVGMNRNEGAAKKIIDLEHNLVRKAAPKASSTVVIIDSDEEDDRDKKPCLPFQEVILPKPVVLSTTRDMVEYHGPNAYQPPIGCHAGSLDVKPELFLVDKDNIRKDKGAFIGVQEEDDPQADTKDDGLEDIWREMSMAIECSKDVAMDSPYDEVEKGSGDCDHSYVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMADSWNAKERTAPEVSGLTFGEDGLVITEISAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLFDFYSAKADSRSQQLEVLKQWVEQKSILFLGYKQFSSIVCDTGTSNVSASCQEVLLKAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFIRSKTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLTPRQKHEVHKLKHLSRKFKISSVGSAVYLHPKLKPMAENCAENSAVSDHMMDEKIESLDVDDGVKSKFFLKMLSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEVFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFRDFEVETIDVEQCGDFFLQSPLIRDDVKILHRRP 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1005 857 SMART helicmild6 692 780 IPR001650 -
Prci11g1005 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 518 IPR027417 -
Prci11g1005 857 SMART ultradead3 319 534 IPR014001 -
Prci11g1005 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 818 IPR027417 -
Prci11g1005 857 Pfam Helicase conserved C-terminal domain 669 779 IPR001650 -
Prci11g1005 857 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 196 854 IPR044567 GO:0080188
Prci11g1005 857 Gene3D - 300 537 IPR038718 -
Prci11g1005 857 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 516 IPR014001 -
Prci11g1005 857 CDD SF2_C_SNF 651 791 - -
Prci11g1005 857 Gene3D - 587 831 IPR027417 -
Prci11g1005 857 Pfam SNF2-related domain 343 607 IPR000330 GO:0005524|GO:0140658
Prci11g1005 857 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 666 834 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1005 Prci-Chr11 9020489 9026653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1005 677 798 RAD5 or RAD16-like Gene Family AT5G43530 36.066 2.50e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci11g1005 SNF2_N 4.7e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1005 K10875 - gmx:100780454 1229.54