Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1003 ATGGGGAAGAACAAAGTGAAGGAAAGTGGTGGGAAAGAGCACTGCCCCTCGACTGTGTTTGTCTCGAACTTGCCCTACTCATTCACCAATTCTCAGCTGGAGGAGGCGTTTAGCGAAGTTGGACCAATCAGGCGCTGCTTCATGGTCATGCAGAAGGGGTCATCCCATCATCGAGGTTTTGGTTATGTTCAATTTGCTGTTGAGGAAGATGCTATCCGTGCAATTGAGTTGAAGAATGGTTCATCTGTTGGAGGTCGGAAAATTGCAGTGAAGCATGCTATGCCTCGTCCTCCCCGTGAAGCGAGACAGTCAAAGTCAAATCAAGGGGAGAATGCTGATGAAATCCCAGAGTCAAAAAATGATGACAATGATGGTGGCTTGTCTGGAGTGAAGAAGCCTTCTTCAGTTACCAAGGAAAAAGTTGCAAATAATGAAAACCATTCAAGGAAGCCTAATGAAGTGAAAAAAGCAGTTCTTTGTAGTGACATAGCAGATGAGGGGGGTTGTTCTGAAAAGCAAAGGGTTGCTAGAACTGTCATATTTGGCGGTCTTATCAATTTGGATATGGCTGAAGTTGTTCATAGCCGAGCAAGGGAGATTGGCAGTGTGTGTTCTGTAAAGTACCCCCTTCCTAGGGAAGAATTCGAGCAGCATGGTCTCTTGCAAGATGGATGTAAACTGAATGCTTCAGCTGTACTTTACACAAGTGTGAAATCAGCACGAGCATCTGTTGCAATGCTGCATCAAAAGGAAATTGGAGGAGGAACTGTTTGGGCACGTCAATTGGGTGGAGAGGGCTCGAAGACTCAAAAATGGAAGCTCATTGTAAGAAATCTTCCATTCAAGGCCAAGGAAAATGAAGTAAAAGAACTGTTCTCATCTGCAGGGTTTGTGTGGGATGTATTTATTCCACGCAAGTCTGATACAGAACTGTCAAAGGGTTTTGCATTTGTGAAATTCACTTGCAAGCAAGATGCAGAAAATGCTATTCAGAAGCTTAATGGATCGAAGTTTGGCAAACGGCTCATAGCTGTTGATTGGACTGTTCCAAAGAAGATATATAGCAGTGATACAAATGCAACACTTGCTTTAGAAAATGGACAACATGAGATGACAGATGAAGATGGTAGTAGTTCTGAGGACAATTCAGAGCATGATGTTGAGGAAACAGGCATAGAGGCCCGTCAAGATGATACTGATCGAGATGACTCCAGCTCCTCACGGGAACAAGATGTACCATCTGAAGTTAACTTTGATGAGGAAGCAGAGATTGCAAAAAAGGTTCTTAAGAGCCTAATCACATCCTCCACCAAAGGAACATCTGCAAATGATGATTCTGTTTTGCCCAAGAAAAACAAGGAATCAAAATCCAATAAAAATGTTAACGAGGCAGATAAAAAATCATCTAAAGAATTAGAAAAGGTTACAGGTGTTTCCGAGCCTGAAATCTTGGACAGAAGGAAGATATCCAATTTTAAGCAAACGGAAGAAGAAAAAGATTTGCAGAGAACTGTTTTCATAAGCAATCTTCCCTTTGACTGTGATAATGAAGAAGTGAAACAACGATTCTCTGGATTTGGGGAAGTGGAATACTTTGTTCCAGTCCTCCACCAGGTGACCAAACGGCCTAGGGGAACTGGTTTTCTCAAATTTAAAACTGCAGATGCAGCTGATGCTGCGGTTTCAACTGCTAATGCAGCTTCTGGCTTGGGTGTACTTCTTAAAGGTAGGCCATTAAAAGTTTTGAGGGCTTTAGATAAGAAATCGGCTCATGACAAGGAACTAAAGAAGGCCAAAAATGACAATCATGACCACCGCAATCTTTACCTGGCAAAGGAAGGACTCATTCTTGAAGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAGGAGTTGGAAAGGAAAAAGGCAACAAAGCTACAATCACCAAATTTTCATGTTTCGAGAACTAGACTTGTTATTTACAACTTACCGAAGTCGATGACTGAAAAAGAGCTCAAGAAGCTTTGCATTGATGCAGTTACCTCTAGGGCCACCAAGCAAAAACCTCAAATTCGGCAGATAAAGTTCTTGAAGGATGTGAAGAAAGGAAAGGTGGTTACAAAAATTCATTCACGTGGAGTTGCCTTTGTTGAATTTTCAGAGCATCAGCATGCCCTTGTGGCTCTAAGAGTTCTTAATAATAATCCAGAAACTTTTGGTCCTGAACATCGGCCAATTGTGGAGTTTGCTGTTGATAATGTTAAAACACTTAAACTTCGGAGAACAAAGATACTGTCTCAGCAGCAGGCTGCTGCTCATGGTGACAGCAATGTCGTGGAAAATGAAGAACCCCATGTTCCAGGTTTCCATACCAATGGAAAGGGTAGAAAACGAAAATTACAGGATCATGACAGACCAGTGAAGGATTCAGTGCTCGATAAAGAAGATGAATCAACAATTATATTGCCAAATCAACATGCCATAGGAGCACGCAATTCCAAAAGGCAGAAAGACAACCGTAAAAGTAAGAAGGCAGAAGGGTCATCATCACAGAGAGAAAATTCAGAAACCTTGTCCACGAAGCCAAATAATTACCAAGATGACCAGAATCGCGGTGGTAGGATGTCAAACACTGTTATTGGCTCCTACAAAACAAGCAATGGTAAAAAAGTAGATCATAGATTGAAGAAGAGGAAGACGCAGAATCAAGTAGAAGATGGGGAAATGGTACCAAAGAAACGATCAAAAAAGAATAAAGAACCTGTAGGGAAAGACGTGGTAGATAACCTTGACATGCTCATACAGCAATATAGATCGAAGTTCTCACAGCAGGGTTCAGGGAATGATGGGGAGAAAAAACCTTCCAAACAGCTAAGAAAATGGTTTGAACCATAA 2892 0.4187 MGKNKVKESGGKEHCPSTVFVSNLPYSFTNSQLEEAFSEVGPIRRCFMVMQKGSSHHRGFGYVQFAVEEDAIRAIELKNGSSVGGRKIAVKHAMPRPPREARQSKSNQGENADEIPESKNDDNDGGLSGVKKPSSVTKEKVANNENHSRKPNEVKKAVLCSDIADEGGCSEKQRVARTVIFGGLINLDMAEVVHSRAREIGSVCSVKYPLPREEFEQHGLLQDGCKLNASAVLYTSVKSARASVAMLHQKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEVKELFSSAGFVWDVFIPRKSDTELSKGFAFVKFTCKQDAENAIQKLNGSKFGKRLIAVDWTVPKKIYSSDTNATLALENGQHEMTDEDGSSSEDNSEHDVEETGIEARQDDTDRDDSSSSREQDVPSEVNFDEEAEIAKKVLKSLITSSTKGTSANDDSVLPKKNKESKSNKNVNEADKKSSKELEKVTGVSEPEILDRRKISNFKQTEEEKDLQRTVFISNLPFDCDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTADAADAAVSTANAASGLGVLLKGRPLKVLRALDKKSAHDKELKKAKNDNHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQELERKKATKLQSPNFHVSRTRLVIYNLPKSMTEKELKKLCIDAVTSRATKQKPQIRQIKFLKDVKKGKVVTKIHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVKTLKLRRTKILSQQQAAAHGDSNVVENEEPHVPGFHTNGKGRKRKLQDHDRPVKDSVLDKEDESTIILPNQHAIGARNSKRQKDNRKSKKAEGSSSQRENSETLSTKPNNYQDDQNRGGRMSNTVIGSYKTSNGKKVDHRLKKRKTQNQVEDGEMVPKKRSKKNKEPVGKDVVDNLDMLIQQYRSKFSQQGSXGNDGEKKPSKQLRKWFEP 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1003 964 MobiDBLite consensus disorder prediction 767 964 - -
Prci11g1003 964 PANTHER RNA-BINDING MOTIF PROTEIN 14B 14 963 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 934 950 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 364 420 - -
Prci11g1003 964 SUPERFAMILY RNA-binding domain, RBD 646 755 IPR035979 GO:0003676
Prci11g1003 964 Gene3D - 434 600 IPR012677 -
Prci11g1003 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 655 745 IPR000504 GO:0003723
Prci11g1003 964 CDD RRM1_RBM28_like 18 96 - -
Prci11g1003 964 SMART rrm1_1 656 747 IPR000504 GO:0003723
Prci11g1003 964 SMART rrm1_1 273 346 IPR000504 GO:0003723
Prci11g1003 964 SMART rrm1_1 504 582 IPR000504 GO:0003723
Prci11g1003 964 SMART rrm1_1 18 91 IPR000504 GO:0003723
Prci11g1003 964 MobiDBLite consensus disorder prediction 850 884 - -
Prci11g1003 964 SUPERFAMILY RNA-binding domain, RBD 268 354 IPR035979 GO:0003676
Prci11g1003 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 350 IPR000504 GO:0003723
Prci11g1003 964 CDD RRM2_RBM28_like 273 349 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 786 819 - -
Prci11g1003 964 SUPERFAMILY RNA-binding domain, RBD 17 258 IPR035979 GO:0003676
Prci11g1003 964 MobiDBLite consensus disorder prediction 112 126 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 447 474 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 437 474 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 897 925 - -
Prci11g1003 964 CDD RRM4_RBM28_like 655 752 - -
Prci11g1003 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Prci11g1003 964 FunFam Putative RNA binding ribonucleoprotein 430 600 - -
Prci11g1003 964 SUPERFAMILY RNA-binding domain, RBD 495 589 IPR035979 GO:0003676
Prci11g1003 964 CDD RRM3_RBM28_like 503 584 - -
Prci11g1003 964 SMART rrm2_1 273 346 IPR003954 GO:0003676
Prci11g1003 964 SMART rrm2_1 18 91 IPR003954 GO:0003676
Prci11g1003 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 586 IPR000504 GO:0003723
Prci11g1003 964 MobiDBLite consensus disorder prediction 830 849 - -
Prci11g1003 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 343 IPR000504 GO:0003723
Prci11g1003 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 565 IPR000504 GO:0003723
Prci11g1003 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 88 IPR000504 GO:0003723
Prci11g1003 964 Gene3D - 258 391 IPR012677 -
Prci11g1003 964 Gene3D - 2 131 IPR012677 -
Prci11g1003 964 MobiDBLite consensus disorder prediction 368 420 - -
Prci11g1003 964 MobiDBLite consensus disorder prediction 86 150 - -
Prci11g1003 964 Gene3D - 654 749 IPR012677 -
Prci11g1003 964 FunFam RNA-binding motif protein 28 654 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1003 Prci-Chr11 9001859 9009896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1003 17 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.34e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1003 K14573 - gmx:100794821 1278.08