Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0983 ATGGAGGTTGTGGTAGCGAACGCGTTAAAATCGAGTCTGCACAGAGAATTGACGTGTCTGAAATCAACACAGCAAGCCTTCGGCGAGGAAATTTGGTGCTTCAATTCGAATAACGGGGTTGCCGGTGAGGATTTCTCAGTGGATGACCTATTTGATTTCTCCCAGAATGAATTTCAACCCGAGTATGAAGAAGATGACGAGGAAAAAGACAGTCTTTCCTGTTCATCCTCACATGACCGGAGCGAAGAAGACACCAACTCCAATTCCTCTTCCCTTGCCGGCGATTCTGACTTCATTTTTTCCAATGAACTCGCTGTTCCGGACGATGATTTGGCTGACCTGGAATGGGTTTCTCATTTCGTTGACGATTCTGTCCCAGAGCTTTCTCTTCTGTACCCCGTCCGTTCCGGGGAAGCGAAGACCCGGTCTGAACCGGAACCTAGCCGGGGCTTTGCGAAAACTCCTTGTTTGCCATTTGAATTTCCCGTCAAGGCGAGAAGCACCAAGCGTAGAAGAGCCAGGATGTTCATCCCCTTGCTTTCCCGGCCATCTTCCCCGCCGTCTTCGTGTTCATCGGTCTTTTCCTCGACGTTGACCCTCATCGCCGTCGGCACGGCTCCGAGCACCGGCTTTGTACAAAGCGTTACGGAAACGCCCGTGAAGAAGCAGAAGAAAAGGGCGGAGGCTCAAGCCGGTAGTGGTAGTGGGTCCCAGATTCAGCGTCGGTGTACCCATTGCCTAGTGCAGAAGACTCCGCAATGGAGAACAGGTCCGCTAGGCCCCAAAACCCTTTGTAACGCTTGTGGGGTCCGCTACAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTAGCAATATTCACTCGAACAGTCATCGTAAAGTGTTAGAGATGAGGAAGAGGAAGGAGATGAGCGAACCGGAATGTGGGTTGACCCGAACTCAAACTGTTCCGAGTTGCTGA 981 0.5178 MEVVVANALKSSLHRELTCLKSTQQAFGEEIWCFNSNNGVAGEDFSVDDLFDFSQNEFQPEYEEDDEEKDSLSCSSSHDRSEEDTNSNSSSLAGDSDFIFSNELAVPDDDLADLEWVSHFVDDSVPELSLLYPVRSGEAKTRSEPEPSRGFAKTPCLPFEFPVKARSTKRRRARMFIPLLSRPSSPPSSCSSVFSSTLTLIAVGTAPSTGFVQSVTETPVKKQKKRAEAQAGSGSGSQIQRRCTHCLVQKTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPACSPTFSSNIHSNSHRKVLEMRKRKEMSEPECGLTRTQTVPSC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0983 326 FunFam GATA transcription factor 234 319 - -
Prci11g0983 326 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Prci11g0983 326 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Prci11g0983 326 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Prci11g0983 326 Gene3D - 235 311 IPR013088 GO:0006355|GO:0008270
Prci11g0983 326 PANTHER GATA TRANSCRIPTION FACTOR 35 310 - -
Prci11g0983 326 MobiDBLite consensus disorder prediction 217 236 - -
Prci11g0983 326 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Prci11g0983 326 PIRSF Txn_fac_GATA_plant 14 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Prci11g0983 326 MobiDBLite consensus disorder prediction 71 85 - -
Prci11g0983 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 300 - -
Prci11g0983 326 CDD ZnF_GATA 242 299 IPR000679 GO:0006355|GO:0043565
Prci11g0983 326 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0983 Prci-Chr11 8819542 8821237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0983 8 325 C2C2-Gata Transcription Factor Family AT5G66320 42.857 1.70e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci11g0983 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0983 - - qsa:O6P43_011543 380.948