Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0978 ATGACGAACCCTGCGGAGGATCCTCCCTCGCCCTCACGTTGCATCCCGCCGCTGCCGTCGCCTGCCACCGTCCAAGACATGCCACTCGACCGGATAGATGACGCTGATGAAGCGAAGACCCTCCTACACTGTGACGAAGCGGAAGAGAAGCCATCCGCTCCTTTTGTTCCGCCTGCTTCCAGGGAAGTGTCAGAGGAAATCAATTTAGCTGACGTTGCTGTAGAGACCAAGAAGTTGGAAGGGGAGCCAGGCGGGGCTGTCATGTCAAATGAAAACGAGGAAGCGGAGAAAGTAGTAACGGGAATTGAGACAGCAGACGCGTATCCAGCTTGCAGCCTTGGTGAGACAGCTGAAGCAGCGGAGGCATGGGCATGGAAGCTGGAAGAGGCAGCCAATGTACCTAACATTGCCGAGGACATTGCCAAGGCGGAAGAGGCAGCCAATGTACCTAACATTGCCGAGGACATTTCAAAGGTGAAAGAGGAAACTGATATAGCTAACATTGATGAGGACAATGAGAAGGTGGAAGAGGAAACTGATGTTGATGACGTTGCTGATGATAATAAGAAGGTGGAGGAGGAAACTAGTGTAGCAAACATTGCCGAGGACATTACAAAGGTGAAAGAGGACACAGATGTGGCTGACATTGTTGGAGGGGAGGTAGATGAGGCCGCCAAGTCATATGAGAAAGAGGAAGCAGAAAAGGTTGTAGCTAGGATGGAGCCAGCAGACTCATATATGGCTTGTTCCCTGGGCAAGACAACTGAAGCAATAGAGATCGGGGAGGTGGATGAAGAGGCAGATGAAGCTGGCATGCCAGATGAGAATAAGGAAGCTGAAAAAGTAGCAGTGGGGATGGAGATGGCAGATGCATCGGTGGGCATGGCTTCCACTCTTGGTGAGACAGCTGAAGCAGCTGGAGTTGGCATGGAGGCTGAAGATACGGAGGAGGCAGCAGAGGTGTTGAATGTGATTAGCAAAGTGGAAGGTACAAGTGACACAGAAGAGGATGCAGATGGAGCTGGCGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGGTGGAGGTAGCTAATGAAGCAGATTTGATGGAAGTGGAAGTAGATGCTGCTGAAGTGGCAGAGTATACAGGGGGTGCTGAGTTGACTGAGGAGATGGAGGTGGCTGAGGGCCAAGGTAGAGGTGTCAGCAGCGGCAAGAGGAAGCGTGGGAAGAACTCAAAGTCTGCAGGGAGAGTTCCAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGCGAGCTTGTGCTTTGTGATCGCAGGGGATGCCCAAAGGCTTACCATCCTACATGTGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGATGCACAAAAGATGCTGTCATCTTGTGCGTTAGGGGAAAGAATGGCTTTTGTGAGACATGCATGAGGACTGTAATGCTGATTGAACAGAATGAGCTGGGGAACAAGGACATGGGACAAGTGGATTTTGATGATAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACACAGATCTAAAAGGGAAGCTATCTCTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCTGATGCCCTTCTTACCAAGCAGGAATCACCTGATGAGTTCTATGATGCTAACAATGACAGGGGATCACATTCAGATAGCTCTTCTGAAAATGTAGAAAGCAATAGTGTTAAAAGAAGAAAGGCCAATAAACGATTGAAGCCCCGTTCCAAGGAGGTGAATTCACACAGCACAATGACACTGATTGGTGACAAAGGGCCATATGTAGATGAGAGGTCTGAGTGGGCATCGAAAGAACTTTTGGAGTTTGTTATGCACATGCGAAATGGTGATAAATCTATTCTGTCCCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGCCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCACGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTACTAAAAGAAGATTCCCAGACTGAAGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGTGATGGCAATATTGATTCCTTTCCGAAGAATGGAAAAGACAAGAGACGTAAAACACGAAAAAAAAGTTATGAAAAGGGACTTCAATCCAATACTGAGGATTATGCAGCTATTGATAATCACAATATTAATTTAATTTATCTTAGGCGCAATTTGGTGGAAGAACTGCTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTCGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGATTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAGGCTATGGCACTTCAAGCGGTCAGAGTAAAAGATTGGTTAGAAACAGAGATAGTAAGGCTAAGTCACCTTCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAGGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTAAAAACACCTGAGGAACGGCAGCGAAGATTGGAGGAAATTCCAGACATACACGCAGACCCAAACATGGATCCAAGTTATGAGTCTGAGGAAGAAGAAGAAGAAACTGATCACAAACGACTAGAGAGTTTCATGAGACCTAGAGGAACTGCATTTGACCGAAGGGGAAGAGAAATGGTTTCTCCTAGAACAGGTGGTTCTAATTCAAATGATTCATGGAGCGGAACAAGGAACTATTCTAACACTAATCGTGAGCTAAGCAGGAATTTGTCTAATAAGGGACTCTCAGTTAAAGTTGATGATGTGTCTAATGCTTCTGAGATATTGAATGATGTTCAAATCGTCCGGGGGAGAGATAGGGAAACACAACTATCTAACAGCTGGGAGGGGCCAAAACTATATTCAAGCTTGGAAAGTGGCAAAAGCACCCAGCCTGTGGTAGCTTCTGAGTCTCTTTCTACTATGTCCAATGCTTCTGCTGTATCATCTACTGTGCCTGCAGTGAAAATTAATGAAACAGAAAAGTTATGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAATTACGTAAATGGAATAATACTGGATATTTCCCTACTGATTTGAGAATTTGGAGAACCGCTGAGAAGCAAGATGAGTCTATACTCTTAACTGATGCCTTATCTGGAAGCTTTTCTAAGGAGCCATCAGCAGTGGATAAAACTTTCCTGAAGGCTCAGGTGGTGCATAATTTGAATTATGCAGCCTCACACTCTGGGAAGCTTCATTTGCCTGCACAACAAGGTGTAGATGCTCAGGTTGGAGGAAGATCAACATTTGATCAGAGTGGTGGATCCTATAATTCACATAATGCTATGAGTTCTCTAGGCCAAACTACTGGAGGAAGTTGGAGGCTTGAAGATAATAATTCTGTAGCAAATAGGCCTTCTCCAAGGACAGTTGAGGTTCCCAAGATCCCTACAAATGTACGGGGGCCTGATGTTGGTGCTAGAATTGAGTCAATGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGACTAAAGGGCAGGCTTTTGAAAGTAAATGGTCCCCAACTCTTGTCCACTCTGCTGGTTCTCTTACAGGGAGTCCTTTTCCTGGTGGCCATGGAGGTTTGCAGCCCCCTGTTGCTGCTGAGAAAGCGGTGCAAGGTGTTGAAAGTGGTTCAAACTCACAACCTGCTAAGATTCCACCTTCAAATCCTGGCATTCCTCTTGGTCATCCTCAAGTGACAATGGTGGCAGCTATTACAGCAGATGCCTCAAGAAATATAGGTACTGACAGTAAAACTGCAAGCATGCAGAACCTGGCTATGAGTGACCATAATTCCCATGCTGAAGCCCAAGGTTGGGGGTCTGGTTTGGTTCAGAAACCTGAAATGGCTGGCTCAATTCAGATGCGAGGGGGTGAACTGCAGGCCTGGGGAGGTGCCCATTCAAGGGTAGAATCAAATAATCCTGCTGCTATGCCTGCCCAACAACCGCTGGCTCATGGCCACTGGGCCGATGCTTCGTCTATCCAGAATTCTACTTCATATAACACTGGAAATCCAATGGGGAATTTCGCCATGTCAGGCATTCAAGACTTGAGACCACCGACTTCAAGTAATCAACCTAATATTCCTGCTTCTCTGCCAACCAACATGCCTTGGGGAATGACTGTTGCAGAAAATCAAAATACTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGCGGACCTGCTGCTGCCAACATGAACATGAATTGGATGCCTGGACAGGGTCCAGCGCCAGGAAATGCAAATCCAGGATGGGCTGCTCCCAGTCAGGGGCCATCTTCAGTAATCCCTACTGGTTGGGTTGCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGCTGGGTTGTGCCTGGTCAAGGTCCGGCACCTGTGAGTGCTAATCCGGGCTGGGTTGCACCAGCAGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTCCCGAACCATAGGGATCGTGGTCCTCATGGTGGTGAACCAGCTTATGGAGGAGATAAAACATGGAATAGGCAGTCTTCGTTTGGTGCTGCAGGCCGAGGAGGAGGTTCTTCAGGGCCTCCTTTTGGGGGGCAGAGAGGAGTGTGCAAGTACCACGAGAGTGGACACTGCAGGAAAGGAGCTTTTTGTGACTATCTGCACACCTGA 5091 0.4624 MTNPAEDPPSPSRCIPPLPSPATVQDMPLDRIDDADEAKTLLHCDEAEEKPSAPFVPPASREVSEEINLADVAVETKKLEGEPGGAVMSNENEEAEKVVTGIETADAYPACSLGETAEAAEAWAWKLEEAANVPNIAEDIAKAEEAANVPNIAEDISKVKEETDIANIDEDNEKVEEETDVDDVADDNKKVEEETSVANIAEDITKVKEDTDVADIVGGEVDEAAKSYEKEEAEKVVARMEPADSYMACSLGKTTEAIEIGEVDEEADEAGMPDENKEAEKVAVGMEMADASVGMASTLGETAEAAGVGMEAEDTEEAAEVLNVISKVEGTSDTEEDADGAGGREEALEAEEVEVANEADLMEVEVDAAEVAEYTGGAELTEEMEVAEGQGRGVSSGKRKRGKNSKSAGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSNCGKNSYYMCYTCTFSLCKGCTKDAVILCVRGKNGFCETCMRTVMLIEQNELGNKDMGQVDFDDKNSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDALLTKQESPDEFYDANNDRGSHSDSSSENVESNSVKRRKANKRLKPRSKEVNSHSTMTLIGDKGPYVDERSEWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSFPKNGKDKRRKTRKKSYEKGLQSNTEDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPDIHADPNMDPSYESEEEEEETDHKRLESFMRPRGTAFDRRGREMVSPRTGGSNSNDSWSGTRNYSNTNRELSRNLSNKGLSVKVDDVSNASEILNDVQIVRGRDRETQLSNSWEGPKLYSSLESGKSTQPVVASESLSTMSNASAVSSTVPAVKINETEKLWHYKDPSGKVQGPFSMAQLRKWNNTGYFPTDLRIWRTAEKQDESILLTDALSGSFSKEPSAVDKTFLKAQVVHNLNYAASHSGKLHLPAQQGVDAQVGGRSTFDQSGGSYNSHNAMSSLGQTTGGSWRLEDNNSVANRPSPRTVEVPKIPTNVRGPDVGARIESMNLPSPTPQTTSYGTKGQAFESKWSPTLVHSAGSLTGSPFPGGHGGLQPPVAAEKAVQGVESGSNSQPAKIPPSNPGIPLGHPQVTMVAAITADASRNIGTDSKTASMQNLAMSDHNSHAEAQGWGSGLVQKPEMAGSIQMRGGELQAWGGAHSRVESNNPAAMPAQQPLAHGHWADASSIQNSTSYNTGNPMGNFAMSGIQDLRPPTSSNQPNIPASLPTNMPWGMTVAENQNTSWGVMPGNPNLNWGGPAAANMNMNWMPGQGPAPGNANPGWAAPSQGPSSVIPTGWVAPGQGHPNANGGWVVPGQGPAPVSANPGWVAPAGGQGMWGNEQNHNGDRFPNHRDRGPHGGEPAYGGDKTWNRQSSFGAAGRGGGSSGPPFGGQRGVCKYHESGHCRKGAFCDYLHT 1696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0978 1696 CDD PHD5_NSD 421 466 - -
Prci11g0978 1696 Pfam GYF domain 1125 1166 IPR003169 GO:0005515
Prci11g0978 1696 ProSiteProfiles Zinc finger C3H1-type profile. 1671 1696 IPR000571 GO:0046872
Prci11g0978 1696 SUPERFAMILY SWIB/MDM2 domain 643 719 IPR036885 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 330 347 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1465 1507 - -
Prci11g0978 1696 ProSitePatterns Zinc finger PHD-type signature. 422 482 IPR019786 -
Prci11g0978 1696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 513 IPR013083 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1 28 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1618 1668 - -
Prci11g0978 1696 Pfam Plus-3 domain 784 887 IPR004343 GO:0003677
Prci11g0978 1696 CDD GYF 1122 1177 IPR003169 GO:0005515
Prci11g0978 1696 ProSiteProfiles GYF domain profile. 1122 1176 IPR003169 GO:0005515
Prci11g0978 1696 SMART rtf1 779 889 IPR004343 GO:0003677
Prci11g0978 1696 Gene3D - 781 909 IPR036128 GO:0003677
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1290 1305 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 581 628 - -
Prci11g0978 1696 SMART PHD_3 421 467 IPR001965 -
Prci11g0978 1696 Gene3D SWIB/MDM2 domain 634 728 IPR036885 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1221 1305 - -
Prci11g0978 1696 FunFam Zinc finger CCCH domain-containing protein 19 632 725 - -
Prci11g0978 1696 SMART swib_2 652 723 IPR019835 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 396 410 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 377 411 - -
Prci11g0978 1696 SMART gyf_5 1123 1178 IPR003169 GO:0005515
Prci11g0978 1696 Coils Coil 158 194 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1344 1364 - -
Prci11g0978 1696 Pfam SWIB/MDM2 domain 645 718 IPR003121 -
Prci11g0978 1696 SUPERFAMILY GYF domain 1116 1175 IPR035445 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 326 347 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1438 1507 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 9 23 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 954 973 - -
Prci11g0978 1696 CDD SWIB-MDM2_like 643 718 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 954 988 - -
Prci11g0978 1696 FunFam Zinc finger CCCH domain-containing protein 19 780 909 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 725 768 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1000 1028 - -
Prci11g0978 1696 FunFam Zinc finger CCCH domain-containing protein 19 412 511 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1221 1264 - -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1626 1641 - -
Prci11g0978 1696 SUPERFAMILY FYVE/PHD zinc finger 407 467 IPR011011 -
Prci11g0978 1696 MobiDBLite consensus disorder prediction 1010 1028 - -
Prci11g0978 1696 ProSiteProfiles Zinc finger PHD-type profile. 419 485 IPR019787 -
Prci11g0978 1696 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 261 1696 - -
Prci11g0978 1696 SUPERFAMILY Plus3-like 780 909 IPR036128 GO:0003677
Prci11g0978 1696 Gene3D - 1124 1182 IPR035445 -
Prci11g0978 1696 ProSiteProfiles Plus3 domain profile. 779 912 IPR004343 GO:0003677
Prci11g0978 1696 ProSiteProfiles SWIB/MDM2 domain profile. 637 720 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0978 Prci-Chr11 8757956 8769630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g0978 394 508 PHD Transcription Factor Family AT5G58610 28.099 1.49e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Prci11g0978 Plus-3 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0978 - - pcin:129284774 3228.34