Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g0913 ATGAGGGCCCACAAAAAACACGCCTCCCTGCAATTCTGGCCCAAGCGCCAAAACCAGAGACGGGAGAAGCAGATCAGAGGAGCGATGGGTGAGAGGGTGACTGGAAAGGTGAAGTGGTTCAGTGACCAGAAAGGTTTTGGCTTCATAACTCCTGACGATGGCGGTGAAGACCTCTTTGTCCACCAATCTGCGATCCGGTCTGAGGGGTTTCGCAGTCTCGCCGATGGAGAGTCTGTCGAGTTTCTGATCGAGTCCGACTCCGGTGGCCGTACCAAGGCTGTTGATGTCACCGGCCCCGCTGAGTCCGATGTTCAGGGGAGCCGACGCGGTGGGGGCGGTGCTGGGGGGAACAGATCCTACGGTGGCGGCAGAGGTGGTGGCTATGGCGGTGGGTATGGCGGCGGTGGCGGCGGTTACGGTACTAGTCGTGGTGGAAGAGGCGGAGGAGGTGGTGGGTACGGTGGTGGATATGGCGGCGGCGGCGGCGGGGGTTGTTATAACTGTGGCGAGGTTGGACACCTGGCTAGGGATTGCTACCAGGGAGGCGGCGGCAGCGGCGGTGGAGGCAGGTATGGCGGAAGCGGCGGCGGCGGCGGAGGAGGCTGTTACACCTGCGGGGAGTCGGGGCATTTTGCAAGGGACTGCCCAACCGGTGCTCGCTGA 663 0.6275 MRAHKKHASLQFWPKRQNQRREKQIRGAMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRSEGFRSLADGESVEFLIESDSGGRTKAVDVTGPAESDVQGSRRGGGGAGGNRSYGGGRGGGYGGGYGGGGGGYGTSRGGRGGGGGGYGGGYGGGGGGGCYNCGEVGHLARDCYQGGGGSGGGGRYGGSGGGGGGGCYTCGESGHFARDCPTGAR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g0913 220 Gene3D - 161 187 - -
Prci11g0913 220 Gene3D - 198 220 - -
Prci11g0913 220 ProSiteProfiles Zinc finger CCHC-type profile. 202 216 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 PRINTS Cold shock protein signature 35 50 IPR002059 GO:0003676
Prci11g0913 220 PRINTS Cold shock protein signature 56 65 IPR002059 GO:0003676
Prci11g0913 220 PRINTS Cold shock protein signature 71 89 IPR002059 GO:0003676
Prci11g0913 220 ProSitePatterns Cold-shock (CSD) domain signature. 46 65 IPR019844 -
Prci11g0913 220 Pfam Zinc knuckle 201 216 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 Pfam Zinc knuckle 164 178 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 ProSiteProfiles Cold-shock (CSD) domain profile. 32 98 IPR002059 GO:0003676
Prci11g0913 220 Gene3D - 27 110 IPR012340 -
Prci11g0913 220 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 SUPERFAMILY Nucleic acid-binding proteins 29 97 IPR012340 -
Prci11g0913 220 PANTHER COLD SHOCK DOMAIN PROTEIN 2 134 217 - -
Prci11g0913 220 Pfam 'Cold-shock' DNA-binding domain 34 98 IPR002059 GO:0003676
Prci11g0913 220 CDD CSP_CDS 33 98 IPR002059 GO:0003676
Prci11g0913 220 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Prci11g0913 220 SUPERFAMILY Retrovirus zinc finger-like domains 156 218 IPR036875 GO:0003676|GO:0008270
Prci11g0913 220 MobiDBLite consensus disorder prediction 85 120 - -
Prci11g0913 220 SMART csp_8 34 99 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g0913 Prci-Chr11 8428722 8429826 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Prci11g0913 CSD 5.9e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g0913 - - mnt:21407697 172.17